Analysis of interatomic Contacts of Structural Units in PDB entry:
9VNC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VNC entry

There are 4 chains in PDB entry 9VNC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 103LYS 1104
D
 PHE 103LYS 1104
C
 PHE 103LYS 1104
B
 PHE 103LYS 1104
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are176 helices in PDB entry 9VNC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
125 136Right-handed alpha
Helix 2
AA2
A
158 176Right-handed alpha
Helix 3
AA3
A
186 202Right-handed alpha
Helix 4
AA4
A
218 220Right-handed 310
Helix 5
AA5
A
274 288Right-handed alpha
Helix 6
AA6
A
309 322Right-handed alpha
Helix 7
AA7
A
333 343Right-handed alpha
Helix 8
AA8
A
351 362Right-handed alpha
Helix 9
AA9
A
362 369Right-handed alpha
Helix 10
AB1
A
370 387Right-handed alpha
Helix 11
AB2
A
402 418Right-handed alpha
Helix 12
AB3
A
426 436Right-handed alpha
Helix 13
AB4
A
438 446Right-handed alpha
Helix 14
AB5
A
458 468Right-handed alpha
Helix 15
AB6
A
470 480Right-handed alpha
Helix 16
AB7
A
483 488Right-handed alpha
Helix 17
AB8
A
489 499Right-handed alpha
Helix 18
AB9
A
502 515Right-handed alpha
Helix 19
AC1
A
518 531Right-handed alpha
Helix 20
AC2
A
559 572Right-handed alpha
Helix 21
AC3
A
573 584Right-handed alpha
Helix 22
AC4
A
586 604Right-handed alpha
Helix 23
AC5
A
615 636Right-handed alpha
Helix 24
AC6
A
636 646Right-handed alpha
Helix 25
AC7
A
655 664Right-handed alpha
Helix 26
AC8
A
665 670Right-handed alpha
Helix 27
AC9
A
671 684Right-handed alpha
Helix 28
AD1
A
691 698Right-handed alpha
Helix 29
AD2
A
723 733Right-handed alpha
Helix 30
AD3
A
733 758Right-handed alpha
Helix 31
AD4
A
765 790Right-handed alpha
Helix 32
AD5
A
791 795Right-handed 310
Helix 33
AD6
A
796 818Right-handed alpha
Helix 34
AD7
A
822 841Right-handed alpha
Helix 35
AD8
A
842 847Right-handed alpha
Helix 36
AD9
A
853 860Right-handed alpha
Helix 37
AE1
A
863 890Right-handed alpha
Helix 38
AE2
A
895 904Right-handed alpha
Helix 39
AE3
A
904 910Right-handed alpha
Helix 40
AE4
A
955 969Right-handed alpha
Helix 41
AE5
A
970 1009Right-handed alpha
Helix 42
AE6
A
1046 1072Right-handed alpha
Helix 43
AE7
A
1073 1075Right-handed 310
Helix 44
AE8
A
1076 1104Right-handed alpha
Helix 45
AE9
D
125 136Right-handed alpha
Helix 46
AF1
D
158 176Right-handed alpha
Helix 47
AF2
D
186 202Right-handed alpha
Helix 48
AF3
D
218 220Right-handed 310
Helix 49
AF4
D
274 288Right-handed alpha
Helix 50
AF5
D
309 322Right-handed alpha
Helix 51
AF6
D
333 343Right-handed alpha
Helix 52
AF7
D
351 362Right-handed alpha
Helix 53
AF8
D
362 369Right-handed alpha
Helix 54
AF9
D
370 387Right-handed alpha
Helix 55
AG1
D
402 418Right-handed alpha
Helix 56
AG2
D
426 436Right-handed alpha
Helix 57
AG3
D
438 446Right-handed alpha
Helix 58
AG4
D
458 468Right-handed alpha
Helix 59
AG5
D
470 480Right-handed alpha
Helix 60
AG6
D
483 488Right-handed alpha
Helix 61
AG7
D
489 499Right-handed alpha
Helix 62
AG8
D
502 515Right-handed alpha
Helix 63
AG9
D
518 531Right-handed alpha
Helix 64
AH1
D
559 572Right-handed alpha
Helix 65
AH2
D
573 584Right-handed alpha
Helix 66
AH3
D
586 604Right-handed alpha
Helix 67
AH4
D
615 636Right-handed alpha
Helix 68
AH5
D
636 646Right-handed alpha
Helix 69
AH6
D
655 664Right-handed alpha
Helix 70
AH7
D
665 670Right-handed alpha
Helix 71
AH8
D
671 684Right-handed alpha
Helix 72
AH9
D
691 698Right-handed alpha
Helix 73
AI1
D
723 733Right-handed alpha
Helix 74
AI2
D
733 758Right-handed alpha
Helix 75
AI3
D
765 790Right-handed alpha
Helix 76
AI4
D
791 795Right-handed 310
Helix 77
AI5
D
796 818Right-handed alpha
Helix 78
AI6
D
822 841Right-handed alpha
Helix 79
AI7
D
842 847Right-handed alpha
Helix 80
AI8
D
853 860Right-handed alpha
Helix 81
AI9
D
863 890Right-handed alpha
Helix 82
AJ1
D
895 904Right-handed alpha
Helix 83
AJ2
D
904 910Right-handed alpha
Helix 84
AJ3
D
955 969Right-handed alpha
Helix 85
AJ4
D
970 1009Right-handed alpha
Helix 86
AJ5
D
1046 1072Right-handed alpha
Helix 87
AJ6
D
1073 1075Right-handed 310
Helix 88
AJ7
D
1076 1104Right-handed alpha
Helix 89
AJ8
C
125 136Right-handed alpha
Helix 90
AJ9
C
158 176Right-handed alpha
Helix 91
AK1
C
186 202Right-handed alpha
Helix 92
AK2
C
218 220Right-handed 310
Helix 93
AK3
C
274 288Right-handed alpha
Helix 94
AK4
C
309 322Right-handed alpha
Helix 95
AK5
C
333 343Right-handed alpha
Helix 96
AK6
C
351 362Right-handed alpha
Helix 97
AK7
C
362 369Right-handed alpha
Helix 98
AK8
C
370 387Right-handed alpha
Helix 99
AK9
C
402 418Right-handed alpha
Helix 100
AL1
C
426 436Right-handed alpha
Helix 101
AL2
C
438 446Right-handed alpha
Helix 102
AL3
C
458 468Right-handed alpha
Helix 103
AL4
C
470 480Right-handed alpha
Helix 104
AL5
C
483 488Right-handed alpha
Helix 105
AL6
C
489 499Right-handed alpha
Helix 106
AL7
C
502 515Right-handed alpha
Helix 107
AL8
C
518 531Right-handed alpha
Helix 108
AL9
C
559 572Right-handed alpha
Helix 109
AM1
C
573 584Right-handed alpha
Helix 110
AM2
C
586 604Right-handed alpha
Helix 111
AM3
C
615 636Right-handed alpha
Helix 112
AM4
C
636 646Right-handed alpha
Helix 113
AM5
C
655 664Right-handed alpha
Helix 114
AM6
C
665 670Right-handed alpha
Helix 115
AM7
C
671 684Right-handed alpha
Helix 116
AM8
C
691 698Right-handed alpha
Helix 117
AM9
C
723 733Right-handed alpha
Helix 118
AN1
C
733 758Right-handed alpha
Helix 119
AN2
C
765 790Right-handed alpha
Helix 120
AN3
C
791 795Right-handed 310
Helix 121
AN4
C
796 818Right-handed alpha
Helix 122
AN5
C
822 841Right-handed alpha
Helix 123
AN6
C
842 847Right-handed alpha
Helix 124
AN7
C
853 860Right-handed alpha
Helix 125
AN8
C
863 890Right-handed alpha
Helix 126
AN9
C
895 904Right-handed alpha
Helix 127
AO1
C
904 910Right-handed alpha
Helix 128
AO2
C
955 969Right-handed alpha
Helix 129
AO3
C
970 1009Right-handed alpha
Helix 130
AO4
C
1046 1072Right-handed alpha
Helix 131
AO5
C
1073 1075Right-handed 310
Helix 132
AO6
C
1076 1104Right-handed alpha
Helix 133
AO7
B
125 136Right-handed alpha
Helix 134
AO8
B
158 176Right-handed alpha
Helix 135
AO9
B
186 202Right-handed alpha
Helix 136
AP1
B
218 220Right-handed 310
Helix 137
AP2
B
274 288Right-handed alpha
Helix 138
AP3
B
309 322Right-handed alpha
Helix 139
AP4
B
333 343Right-handed alpha
Helix 140
AP5
B
351 362Right-handed alpha
Helix 141
AP6
B
362 369Right-handed alpha
Helix 142
AP7
B
370 387Right-handed alpha
Helix 143
AP8
B
402 418Right-handed alpha
Helix 144
AP9
B
426 436Right-handed alpha
Helix 145
AQ1
B
438 446Right-handed alpha
Helix 146
AQ2
B
458 468Right-handed alpha
Helix 147
AQ3
B
470 480Right-handed alpha
Helix 148
AQ4
B
483 488Right-handed alpha
Helix 149
AQ5
B
489 499Right-handed alpha
Helix 150
AQ6
B
502 515Right-handed alpha
Helix 151
AQ7
B
518 531Right-handed alpha
Helix 152
AQ8
B
559 572Right-handed alpha
Helix 153
AQ9
B
573 584Right-handed alpha
Helix 154
AR1
B
586 604Right-handed alpha
Helix 155
AR2
B
615 636Right-handed alpha
Helix 156
AR3
B
636 646Right-handed alpha
Helix 157
AR4
B
655 664Right-handed alpha
Helix 158
AR5
B
665 670Right-handed alpha
Helix 159
AR6
B
671 684Right-handed alpha
Helix 160
AR7
B
691 698Right-handed alpha
Helix 161
AR8
B
723 733Right-handed alpha
Helix 162
AR9
B
733 758Right-handed alpha
Helix 163
AS1
B
765 790Right-handed alpha
Helix 164
AS2
B
791 795Right-handed 310
Helix 165
AS3
B
796 818Right-handed alpha
Helix 166
AS4
B
822 841Right-handed alpha
Helix 167
AS5
B
842 847Right-handed alpha
Helix 168
AS6
B
853 860Right-handed alpha
Helix 169
AS7
B
863 890Right-handed alpha
Helix 170
AS8
B
895 904Right-handed alpha
Helix 171
AS9
B
904 910Right-handed alpha
Helix 172
AT1
B
955 969Right-handed alpha
Helix 173
AT2
B
970 1009Right-handed alpha
Helix 174
AT3
B
1046 1072Right-handed alpha
Helix 175
AT4
B
1073 1075Right-handed 310
Helix 176
AT5
B
1076 1104Right-handed alpha
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There are 4 sheets in PDB entry 9VNC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 120first strand
Strand 2
A
259 263parallel
Strand 3
A
211 216parallel
Strand 4
A
178 181parallel
Strand 5
A
144 147parallel
Strand 6
A
301 305parallel
Strand 7
A
326 329parallel
Strand 8
A
393 394parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
117 120first strand
Strand 2
D
259 263parallel
Strand 3
D
211 216parallel
Strand 4
D
178 181parallel
Strand 5
D
144 147parallel
Strand 6
D
301 305parallel
Strand 7
D
326 329parallel
Strand 8
D
393 394parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
117 120first strand
Strand 2
C
259 263parallel
Strand 3
C
211 216parallel
Strand 4
C
178 181parallel
Strand 5
C
144 147parallel
Strand 6
C
301 305parallel
Strand 7
C
326 329parallel
Strand 8
C
393 394parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 120first strand
Strand 2
B
259 263parallel
Strand 3
B
211 216parallel
Strand 4
B
178 181parallel
Strand 5
B
144 147parallel
Strand 6
B
301 305parallel
Strand 7
B
326 329parallel
Strand 8
B
393 394parallel
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