Analysis of interatomic Contacts of Structural Units in PDB entry:
9VND


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VND entry

There are 7 chains in PDB entry 9VND (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 14ILE 127
C
 HIS 4GLU 135
A
 LEU 28GLU 131
D
 ASP 24VAL 124
J
 ILE 7ALA 193
E
 ALA 15PRO 119
F
 ASN 30ILE 127
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 3 helices in PDB entry 9VND. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
65 70Right-handed alpha
Helix 2
AA2
J
9 19Right-handed alpha
Helix 3
AA3
E
65 70Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 9VND. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 25first strand
Strand 2
B
16 18anti-parallel
Strand 3
B
77 79anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
120 123first strand
Strand 2
C
53 57anti-parallel
Strand 3
C
30 36anti-parallel
Strand 4
B
94 106anti-parallel
Strand 5
B
112 120anti-parallel
Strand 6
B
53 56anti-parallel
Strand 7
B
28 31anti-parallel
Strand 8
A
104 109anti-parallel
Strand 9
A
116 122anti-parallel
Strand 10
A
54 59anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 28first strand
Strand 2
C
5 7anti-parallel
Strand 3
C
80 84anti-parallel
Strand 4
C
94 96anti-parallel
Strand 5
C
127 128anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
107 110first strand
Strand 2
C
114 117anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
D
104 108anti-parallel
Strand 3
D
117 122anti-parallel
Strand 4
D
54 57anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 34first strand
Strand 2
E
97 105anti-parallel
Strand 3
E
112 118anti-parallel
Strand 4
E
53 56anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
180 182first strand
Strand 2
J
73 82anti-parallel
Strand 3
J
34 44anti-parallel
Strand 4
J
57 60anti-parallel
Strand 5
J
190 191parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
29 33first strand
Strand 2
F
104 108anti-parallel
Strand 3
F
116 122anti-parallel
Strand 4
F
54 59anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il