Analysis of interatomic Contacts of Structural Units in PDB entry:
9VNE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VNE entry

There are 6 chains in PDB entry 9VNE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5VAL 124
B
 LEU 13ILE 124
D
 SER 6GLY 130
E
 LEU 13ILE 127
F
 LYS 5GLY 130
C
 HIS 4VAL 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 9VNE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 72Right-handed alpha
Helix 2
AA2
B
61 70Right-handed alpha
Helix 3
AA3
D
63 71Right-handed alpha
Helix 4
AA4
E
61 70Right-handed alpha
Helix 5
AA5
C
68 72Right-handed alpha
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There are 8 sheets in PDB entry 9VNE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
6 9anti-parallel
Strand 3
A
79 83anti-parallel
Strand 4
A
92 96anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
53 59anti-parallel
Strand 3
A
117 123anti-parallel
Strand 4
A
100 108anti-parallel
Strand 5
B
28 33anti-parallel
Strand 6
B
51 56anti-parallel
Strand 7
B
110 117anti-parallel
Strand 8
B
98 106anti-parallel
Strand 9
C
28 36anti-parallel
Strand 10
C
53 59anti-parallel
Strand 11
C
117 123anti-parallel
Strand 12
C
100 107anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 25first strand
Strand 2
B
14 18anti-parallel
Strand 3
B
74 81anti-parallel
Strand 4
B
90 96anti-parallel
Strand 5
B
121 123anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 33first strand
Strand 2
D
53 59anti-parallel
Strand 3
D
117 123anti-parallel
Strand 4
D
101 109anti-parallel
Strand 5
E
28 33anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
22 24first strand
Strand 2
E
16 19anti-parallel
Strand 3
E
76 79anti-parallel
Strand 4
E
90 94anti-parallel
Strand 5
E
121 124anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
52 54first strand
Strand 2
E
110 117anti-parallel
Strand 3
E
98 106anti-parallel
Strand 4
F
25 34anti-parallel
Strand 5
F
53 59anti-parallel
Strand 6
F
117 123anti-parallel
Strand 7
F
100 107anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
52 54first strand
Strand 2
E
110 117anti-parallel
Strand 3
E
98 106anti-parallel
Strand 4
F
25 34anti-parallel
Strand 5
F
6 9anti-parallel
Strand 6
F
79 84anti-parallel
Strand 7
F
90 96anti-parallel
Strand 8
F
127 128anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 9first strand
Strand 2
C
79 84anti-parallel
Strand 3
C
90 96anti-parallel
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