Analysis of interatomic Contacts of Structural Units in PDB entry:
9VNQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VNQ entry

There are 6 chains in PDB entry 9VNQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 18	ASN 244
B	MET 18	ASN 244
C	MET 18	ASN 244
D	MET 18	ASN 244
E	C 1	A 31
F	T 1	G 31

There are 34 helices in PDB entry 9VNQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	75	Right-handed 310
Helix 2	AA2	A	92	100	Right-handed alpha
Helix 3	AA3	A	117	119	Right-handed 310
Helix 4	AA4	A	136	151	Right-handed alpha
Helix 5	AA5	A	189	193	Right-handed 310
Helix 6	AA6	A	203	218	Right-handed alpha
Helix 7	AA7	A	222	226	Right-handed 310
Helix 8	AA8	A	228	244	Right-handed alpha
Helix 9	AA9	B	73	75	Right-handed 310
Helix 10	AB1	B	92	102	Right-handed alpha
Helix 11	AB2	B	117	119	Right-handed 310
Helix 12	AB3	B	136	151	Right-handed alpha
Helix 13	AB4	B	183	187	Right-handed 310
Helix 14	AB5	B	189	193	Right-handed 310
Helix 15	AB6	B	203	218	Right-handed alpha
Helix 16	AB7	B	228	244	Right-handed alpha
Helix 17	AB8	C	73	75	Right-handed 310
Helix 18	AB9	C	92	100	Right-handed alpha
Helix 19	AC1	C	117	119	Right-handed 310
Helix 20	AC2	C	137	151	Right-handed alpha
Helix 21	AC3	C	183	187	Right-handed 310
Helix 22	AC4	C	189	193	Right-handed 310
Helix 23	AC5	C	203	218	Right-handed alpha
Helix 24	AC6	C	222	226	Right-handed 310
Helix 25	AC7	C	228	244	Right-handed alpha
Helix 26	AC8	D	73	75	Right-handed 310
Helix 27	AC9	D	92	100	Right-handed alpha
Helix 28	AD1	D	117	119	Right-handed 310
Helix 29	AD2	D	136	151	Right-handed alpha
Helix 30	AD3	D	183	187	Right-handed 310
Helix 31	AD4	D	189	193	Right-handed 310
Helix 32	AD5	D	203	218	Right-handed alpha
Helix 33	AD6	D	222	226	Right-handed 310
Helix 34	AD7	D	228	244	Right-handed alpha

There are 10 sheets in PDB entry 9VNQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	28	first strand
Strand 2	A	31	39	anti-parallel
Strand 3	A	124	132	anti-parallel
Strand 4	A	175	181	anti-parallel
Strand 5	A	165	172	anti-parallel
Strand 6	A	152	158	anti-parallel
Strand 7	A	107	115	anti-parallel
Strand 8	A	20	28	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	52	first strand
Strand 2	B	77	84	anti-parallel
Strand 3	B	87	91	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	65	first strand
Strand 2	B	59	65	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	91	first strand
Strand 2	A	77	84	anti-parallel
Strand 3	B	49	52	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	28	first strand
Strand 2	B	31	39	anti-parallel
Strand 3	B	124	132	anti-parallel
Strand 4	B	175	181	anti-parallel
Strand 5	B	164	172	anti-parallel
Strand 6	B	152	159	anti-parallel
Strand 7	B	107	115	anti-parallel
Strand 8	B	22	28	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	28	first strand
Strand 2	C	31	39	anti-parallel
Strand 3	C	124	132	anti-parallel
Strand 4	C	175	181	anti-parallel
Strand 5	C	164	172	anti-parallel
Strand 6	C	152	159	anti-parallel
Strand 7	C	107	115	anti-parallel
Strand 8	C	20	28	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	52	first strand
Strand 2	D	77	84	anti-parallel
Strand 3	D	87	91	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	65	first strand
Strand 2	D	59	65	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	91	first strand
Strand 2	C	77	84	anti-parallel
Strand 3	D	49	52	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	28	first strand
Strand 2	D	31	39	anti-parallel
Strand 3	D	124	132	anti-parallel
Strand 4	D	175	181	anti-parallel
Strand 5	D	164	172	anti-parallel
Strand 6	D	152	159	anti-parallel
Strand 7	D	107	115	anti-parallel
Strand 8	D	22	28	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VNQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VNQ