Analysis of interatomic Contacts of Structural Units in PDB entry:
9VNU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VNU entry

There is 1 chain in PDB entry 9VNU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 16LEU 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9VNU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 35Right-handed alpha
Helix 2
AA2
A
69 80Right-handed alpha
Helix 3
AA3
A
84 98Right-handed alpha
Helix 4
AA4
A
99 101Right-handed 310
Helix 5
AA5
A
117 136Right-handed alpha
Helix 6
AA6
A
169 171Right-handed 310
Helix 7
AA7
A
195 203Right-handed alpha
Helix 8
AA8
A
203 208Right-handed alpha
Helix 9
AA9
A
218 224Right-handed alpha
Helix 10
AB1
A
229 240Right-handed alpha
Helix 11
AB2
A
251 259Right-handed 310
Helix 12
AB3
A
272 281Right-handed alpha
Helix 13
AB4
A
284 289Right-handed alpha
Helix 14
AB5
A
303 305Right-handed 310
Helix 15
AB6
A
306 316Right-handed alpha
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There are 3 sheets in PDB entry 9VNU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 67first strand
Strand 2
A
156 167anti-parallel
Strand 3
A
103 113anti-parallel
Strand 4
A
138 146parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 247first strand
Strand 2
A
296 302anti-parallel
Strand 3
A
182 187anti-parallel
Strand 4
A
320 327anti-parallel
Strand 5
A
263 266anti-parallel
Strand 6
A
333 335parallel
Strand 7
A
340 342anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
216 217anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il