Analysis of interatomic Contacts of Structural Units in PDB entry:
9VNV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VNV entry

There are 2 chains in PDB entry 9VNV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 44LEU 334
B
 HIS 44LEU 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9VNV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 74Right-handed alpha
Helix 2
AA2
A
78 92Right-handed alpha
Helix 3
AA3
A
93 95Right-handed 310
Helix 4
AA4
A
111 130Right-handed alpha
Helix 5
AA5
A
187 196Right-handed alpha
Helix 6
AA6
A
210 215Right-handed alpha
Helix 7
AA7
A
221 230Right-handed alpha
Helix 8
AA8
A
243 251Right-handed 310
Helix 9
AA9
A
265 273Right-handed alpha
Helix 10
AB1
A
276 281Right-handed alpha
Helix 11
AB2
A
295 297Right-handed 310
Helix 12
AB3
A
298 310Right-handed alpha
Helix 13
AB4
A
329 331Right-handed 310
Helix 14
AB5
B
65 74Right-handed alpha
Helix 15
AB6
B
78 93Right-handed alpha
Helix 16
AB7
B
111 130Right-handed alpha
Helix 17
AB8
B
187 200Right-handed alpha
Helix 18
AB9
B
210 216Right-handed alpha
Helix 19
AC1
B
221 232Right-handed alpha
Helix 20
AC2
B
243 251Right-handed 310
Helix 21
AC3
B
264 272Right-handed alpha
Helix 22
AC4
B
276 281Right-handed alpha
Helix 23
AC5
B
295 308Right-handed alpha
Helix 24
AC6
B
329 331Right-handed 310
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There are 6 sheets in PDB entry 9VNV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
54 62anti-parallel
Strand 3
A
148 159anti-parallel
Strand 4
A
97 107anti-parallel
Strand 5
A
132 140parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 239first strand
Strand 2
A
288 294anti-parallel
Strand 3
A
174 179anti-parallel
Strand 4
A
312 319anti-parallel
Strand 5
A
255 258anti-parallel
Strand 6
A
325 327parallel
Strand 7
A
332 334anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
208 209anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 50first strand
Strand 2
B
54 62anti-parallel
Strand 3
B
148 159anti-parallel
Strand 4
B
97 107anti-parallel
Strand 5
B
132 140parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 239first strand
Strand 2
B
288 294anti-parallel
Strand 3
B
174 179anti-parallel
Strand 4
B
312 319anti-parallel
Strand 5
B
255 258anti-parallel
Strand 6
B
325 327parallel
Strand 7
B
332 334anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 205first strand
Strand 2
B
208 209anti-parallel
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