Analysis of interatomic Contacts of Structural Units in PDB entry:
9VNW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VNW entry

There is 1 chain in PDB entry 9VNW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 54LEU 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9VNW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 74Right-handed alpha
Helix 2
AA2
A
78 93Right-handed alpha
Helix 3
AA3
A
111 130Right-handed alpha
Helix 4
AA4
A
187 200Right-handed alpha
Helix 5
AA5
A
210 216Right-handed alpha
Helix 6
AA6
A
221 229Right-handed alpha
Helix 7
AA7
A
243 251Right-handed 310
Helix 8
AA8
A
265 273Right-handed alpha
Helix 9
AA9
A
276 282Right-handed alpha
Helix 10
AB1
A
295 297Right-handed 310
Helix 11
AB2
A
298 310Right-handed alpha
Helix 12
AB3
A
329 331Right-handed 310
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There are 3 sheets in PDB entry 9VNW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 62first strand
Strand 2
A
148 158anti-parallel
Strand 3
A
97 107anti-parallel
Strand 4
A
132 140parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 239first strand
Strand 2
A
288 294anti-parallel
Strand 3
A
174 179anti-parallel
Strand 4
A
312 322anti-parallel
Strand 5
A
254 258anti-parallel
Strand 6
A
325 327parallel
Strand 7
A
332 333anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
208 209anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il