Analysis of interatomic Contacts of Structural Units in PDB entry:
9VO5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VO5 entry

There are 4 chains in PDB entry 9VO5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 36	HIS 476
B	GLY 331	THR 688
C	PRO 38	HIS 476
D	LEU 333	LEU 370

There are 11 helices in PDB entry 9VO5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	79	Right-handed 310
Helix 2	AA2	A	91	95	Right-handed 310
Helix 3	AA3	A	96	114	Right-handed alpha
Helix 4	AA4	A	275	282	Right-handed 310
Helix 5	AA5	B	347	350	Right-handed 310
Helix 6	AA6	C	73	79	Right-handed 310
Helix 7	AA7	C	81	85	Right-handed 310
Helix 8	AA8	C	89	95	Right-handed 310
Helix 9	AA9	C	96	114	Right-handed alpha
Helix 10	AB1	C	275	282	Right-handed 310
Helix 11	AB2	D	347	350	Right-handed 310

There are 36 sheets in PDB entry 9VO5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	41	44	anti-parallel
Strand 3	A	168	170	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	71	first strand
Strand 2	A	52	63	anti-parallel
Strand 3	A	119	120	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	71	first strand
Strand 2	A	52	63	anti-parallel
Strand 3	A	132	138	anti-parallel
Strand 4	A	153	157	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	161	first strand
Strand 2	A	164	166	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	191	first strand
Strand 2	A	180	186	anti-parallel
Strand 3	A	201	208	anti-parallel
Strand 4	A	286	294	anti-parallel
Strand 5	A	232	234	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	191	first strand
Strand 2	A	180	186	anti-parallel
Strand 3	A	201	208	anti-parallel
Strand 4	A	286	294	anti-parallel
Strand 5	A	241	244	anti-parallel
Strand 6	A	247	248	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	195	first strand
Strand 2	A	326	336	parallel
Strand 3	A	308	317	anti-parallel
Strand 4	A	222	228	anti-parallel
Strand 5	A	267	273	anti-parallel
Strand 6	A	255	261	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	400	first strand
Strand 2	A	338	346	anti-parallel
Strand 3	A	465	473	parallel
Strand 4	A	452	459	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	388	first strand
Strand 2	A	358	363	anti-parallel
Strand 3	A	403	411	anti-parallel
Strand 4	A	423	431	anti-parallel
Strand 5	A	437	445	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	374	first strand
Strand 2	A	380	382	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	339	first strand
Strand 2	B	352	359	anti-parallel
Strand 3	B	418	424	anti-parallel
Strand 4	B	381	387	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	344	first strand
Strand 2	B	448	452	parallel
Strand 3	B	433	436	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	395	first strand
Strand 2	B	401	405	anti-parallel
Strand 3	B	371	375	anti-parallel
Strand 4	B	439	440	anti-parallel
Strand 5	B	443	444	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	507	first strand
Strand 2	B	455	462	anti-parallel
Strand 3	B	542	549	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	496	498	first strand
Strand 2	B	475	480	anti-parallel
Strand 3	B	512	520	anti-parallel
Strand 4	B	532	536	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	487	first strand
Strand 2	B	493	494	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	589	592	first strand
Strand 2	B	595	598	anti-parallel
Strand 3	B	614	621	parallel
Strand 4	B	555	563	anti-parallel
Strand 5	B	672	678	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	574	579	first strand
Strand 2	B	623	631	anti-parallel
Strand 3	B	642	646	anti-parallel
Strand 4	B	652	655	anti-parallel
Strand 5	B	662	663	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	129	first strand
Strand 2	C	41	44	anti-parallel
Strand 3	C	168	170	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	71	first strand
Strand 2	C	52	63	anti-parallel
Strand 3	C	119	121	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	71	first strand
Strand 2	C	52	63	anti-parallel
Strand 3	C	132	138	anti-parallel
Strand 4	C	153	157	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	161	first strand
Strand 2	C	164	166	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	191	first strand
Strand 2	C	180	186	anti-parallel
Strand 3	C	201	208	anti-parallel
Strand 4	C	286	294	anti-parallel
Strand 5	C	232	234	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	191	first strand
Strand 2	C	180	186	anti-parallel
Strand 3	C	201	208	anti-parallel
Strand 4	C	286	294	anti-parallel
Strand 5	C	241	244	anti-parallel
Strand 6	C	247	248	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	195	first strand
Strand 2	C	326	336	parallel
Strand 3	C	308	317	anti-parallel
Strand 4	C	222	228	anti-parallel
Strand 5	C	267	273	anti-parallel
Strand 6	C	255	261	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	400	first strand
Strand 2	C	338	346	anti-parallel
Strand 3	C	465	473	parallel
Strand 4	C	452	459	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	387	388	first strand
Strand 2	C	358	363	anti-parallel
Strand 3	C	403	411	anti-parallel
Strand 4	C	423	431	anti-parallel
Strand 5	C	437	445	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	374	first strand
Strand 2	C	380	382	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	335	339	first strand
Strand 2	D	352	359	anti-parallel
Strand 3	D	418	424	anti-parallel
Strand 4	D	381	387	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	343	344	first strand
Strand 2	D	448	452	parallel
Strand 3	D	433	436	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	392	395	first strand
Strand 2	D	401	405	anti-parallel
Strand 3	D	371	375	anti-parallel
Strand 4	D	439	440	anti-parallel
Strand 5	D	443	444	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	505	507	first strand
Strand 2	D	455	462	anti-parallel
Strand 3	D	542	549	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	496	498	first strand
Strand 2	D	475	480	anti-parallel
Strand 3	D	512	520	anti-parallel
Strand 4	D	532	536	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	486	487	first strand
Strand 2	D	493	494	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	589	592	first strand
Strand 2	D	595	598	anti-parallel
Strand 3	D	614	621	parallel
Strand 4	D	555	563	anti-parallel
Strand 5	D	672	678	parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	574	579	first strand
Strand 2	D	623	631	anti-parallel
Strand 3	D	642	646	anti-parallel
Strand 4	D	652	655	anti-parallel
Strand 5	D	662	663	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VO5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VO5