Analysis of interatomic Contacts of Structural Units in PDB entry:
9VOR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VOR entry

There are 4 chains in PDB entry 9VOR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 66SER 670
B
 ASP 66SER 670
C
 GLU 2SER 122
E
 GLU 2SER 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 9VOR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 75Right-handed alpha
Helix 2
AA2
A
76 78Right-handed 310
Helix 3
AA3
A
80 87Right-handed alpha
Helix 4
AA4
A
88 94Right-handed 310
Helix 5
AA5
A
118 137Right-handed alpha
Helix 6
AA6
A
150 167Right-handed alpha
Helix 7
AA7
A
418 441Right-handed alpha
Helix 8
AA8
A
444 451Right-handed alpha
Helix 9
AA9
A
451 466Right-handed alpha
Helix 10
AB1
A
470 474Right-handed 310
Helix 11
AB2
A
477 495Right-handed alpha
Helix 12
AB3
A
498 514Right-handed alpha
Helix 13
AB4
A
525 549Right-handed alpha
Helix 14
AB5
A
550 554Right-handed 310
Helix 15
AB6
A
578 600Right-handed alpha
Helix 16
AB7
A
608 634Right-handed alpha
Helix 17
AB8
A
639 664Right-handed alpha
Helix 18
AB9
A
665 667Right-handed 310
Helix 19
AC1
B
67 76Right-handed alpha
Helix 20
AC2
B
81 87Right-handed alpha
Helix 21
AC3
B
118 139Right-handed alpha
Helix 22
AC4
B
150 164Right-handed alpha
Helix 23
AC5
B
418 440Right-handed alpha
Helix 24
AC6
B
451 466Right-handed alpha
Helix 25
AC7
B
470 474Right-handed 310
Helix 26
AC8
B
477 514Right-handed alpha
Helix 27
AC9
B
525 549Right-handed alpha
Helix 28
AD1
B
550 554Right-handed 310
Helix 29
AD2
B
578 600Right-handed alpha
Helix 30
AD3
B
608 634Right-handed alpha
Helix 31
AD4
B
639 662Right-handed alpha
Helix 32
AD5
B
663 668Right-handed 310
Helix 33
AD6
C
90 94Right-handed 310
Helix 34
AD7
E
90 94Right-handed 310
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There are 12 sheets in PDB entry 9VOR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
191 192anti-parallel
Strand 3
A
171 176anti-parallel
Strand 4
A
303 309anti-parallel
Strand 5
A
281 288anti-parallel
Strand 6
A
268 270anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
559 562first strand
Strand 2
A
570 573anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 203first strand
Strand 2
B
191 192anti-parallel
Strand 3
B
172 176anti-parallel
Strand 4
B
302 307anti-parallel
Strand 5
B
286 289anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
559 562first strand
Strand 2
B
570 573anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 6first strand
Strand 2
C
24 25anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 13first strand
Strand 2
C
119 120parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 74first strand
Strand 2
C
83 85anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
96 97first strand
Strand 2
C
116 117anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
13 14first strand
Strand 2
E
120 121parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
20 23first strand
Strand 2
E
82 85anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
38 39first strand
Strand 2
E
95 98anti-parallel
Strand 3
E
116 118anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
51 52first strand
Strand 2
E
61 62anti-parallel
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