Analysis of interatomic Contacts of Structural Units in PDB entry:
9VOS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VOS entry

There are 6 chains in PDB entry 9VOS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 66	ARG 730
A	ASP 66	LEU 740
C	SER 18	SER 218
D	LEU 38	ALA 353
H	GLU 2	SER 122
I	GLU 2	SER 122

There are 58 helices in PDB entry 9VOS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	66	74	Right-handed alpha
Helix 2	AA2	B	81	87	Right-handed alpha
Helix 3	AA3	B	88	93	Right-handed 310
Helix 4	AA4	B	122	142	Right-handed alpha
Helix 5	AA5	B	150	152	Right-handed 310
Helix 6	AA6	B	153	164	Right-handed alpha
Helix 7	AA7	B	225	231	Right-handed alpha
Helix 8	AA8	B	292	297	Right-handed alpha
Helix 9	AA9	B	323	327	Right-handed 310
Helix 10	AB1	B	416	442	Right-handed alpha
Helix 11	AB2	B	444	451	Right-handed alpha
Helix 12	AB3	B	451	471	Right-handed alpha
Helix 13	AB4	B	482	486	Right-handed 310
Helix 14	AB5	B	491	496	Right-handed alpha
Helix 15	AB6	B	498	509	Right-handed alpha
Helix 16	AB7	B	510	515	Right-handed alpha
Helix 17	AB8	B	524	529	Right-handed alpha
Helix 18	AB9	B	535	550	Right-handed alpha
Helix 19	AC1	B	578	599	Right-handed alpha
Helix 20	AC2	B	608	634	Right-handed alpha
Helix 21	AC3	B	641	652	Right-handed alpha
Helix 22	AC4	B	654	662	Right-handed alpha
Helix 23	AC5	B	663	667	Right-handed 310
Helix 24	AC6	B	713	730	Right-handed alpha
Helix 25	AC7	A	67	74	Right-handed alpha
Helix 26	AC8	A	75	77	Right-handed 310
Helix 27	AC9	A	81	87	Right-handed alpha
Helix 28	AD1	A	90	95	Right-handed alpha
Helix 29	AD2	A	122	141	Right-handed alpha
Helix 30	AD3	A	150	152	Right-handed 310
Helix 31	AD4	A	153	166	Right-handed alpha
Helix 32	AD5	A	223	237	Right-handed alpha
Helix 33	AD6	A	414	442	Right-handed alpha
Helix 34	AD7	A	455	464	Right-handed alpha
Helix 35	AD8	A	466	475	Right-handed alpha
Helix 36	AD9	A	480	487	Right-handed alpha
Helix 37	AE1	A	492	512	Right-handed alpha
Helix 38	AE2	A	526	555	Right-handed alpha
Helix 39	AE3	A	576	582	Right-handed alpha
Helix 40	AE4	A	584	589	Right-handed alpha
Helix 41	AE5	A	589	598	Right-handed alpha
Helix 42	AE6	A	608	634	Right-handed alpha
Helix 43	AE7	A	639	649	Right-handed alpha
Helix 44	AE8	A	654	662	Right-handed alpha
Helix 45	AE9	A	709	732	Right-handed alpha
Helix 46	AF1	C	20	36	Right-handed alpha
Helix 47	AF2	C	58	70	Right-handed alpha
Helix 48	AF3	C	74	88	Right-handed alpha
Helix 49	AF4	C	112	120	Right-handed 310
Helix 50	AF5	C	124	138	Right-handed alpha
Helix 51	AF6	C	146	160	Right-handed alpha
Helix 52	AF7	C	163	180	Right-handed alpha
Helix 53	AF8	C	183	200	Right-handed alpha
Helix 54	AF9	D	39	43	Right-handed alpha
Helix 55	AG1	D	141	146	Right-handed 310
Helix 56	AG2	H	66	70	Right-handed 310
Helix 57	AG3	H	90	94	Right-handed 310
Helix 58	AG4	I	90	94	Right-handed 310

There are 17 sheets in PDB entry 9VOS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	176	first strand
Strand 2	B	190	192	anti-parallel
Strand 3	B	205	206	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	289	first strand
Strand 2	B	304	308	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	559	563	first strand
Strand 2	B	569	573	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	176	first strand
Strand 2	A	191	194	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	559	563	first strand
Strand 2	A	569	573	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	93	first strand
Strand 2	C	108	110	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	60	first strand
Strand 2	D	348	353	anti-parallel
Strand 3	D	340	342	anti-parallel
Strand 4	D	331	333	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	71	first strand
Strand 2	D	77	82	anti-parallel
Strand 3	D	86	91	anti-parallel
Strand 4	D	96	102	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	113	first strand
Strand 2	D	119	123	anti-parallel
Strand 3	D	128	133	anti-parallel
Strand 4	D	147	151	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	161	first strand
Strand 2	D	167	172	anti-parallel
Strand 3	D	176	181	anti-parallel
Strand 4	D	187	192	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	203	first strand
Strand 2	D	211	216	anti-parallel
Strand 3	D	221	225	anti-parallel
Strand 4	D	233	235	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	242	247	first strand
Strand 2	D	253	258	anti-parallel
Strand 3	D	263	267	anti-parallel
Strand 4	D	275	277	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	286	291	first strand
Strand 2	D	297	302	anti-parallel
Strand 3	D	307	311	anti-parallel
Strand 4	D	317	321	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	14	first strand
Strand 2	H	116	121	parallel
Strand 3	H	96	97	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	22	24	first strand
Strand 2	H	81	85	anti-parallel
Strand 3	H	72	74	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	13	first strand
Strand 2	I	116	120	parallel
Strand 3	I	96	97	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	21	24	first strand
Strand 2	I	81	84	anti-parallel
Strand 3	I	73	74	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VOS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VOS