Analysis of interatomic Contacts of Structural Units in PDB entry:
9VP6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VP6 entry

There are 2 chains in PDB entry 9VP6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 10GLN 551
B
 SER 2GLN 551
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 9VP6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 32Right-handed alpha
Helix 2
AA2
A
36 46Right-handed alpha
Helix 3
AA3
A
65 69Right-handed 310
Helix 4
AA4
A
81 87Right-handed alpha
Helix 5
AA5
A
87 98Right-handed alpha
Helix 6
AA6
A
117 125Right-handed alpha
Helix 7
AA7
A
126 130Right-handed 310
Helix 8
AA8
A
133 138Right-handed alpha
Helix 9
AA9
A
139 145Right-handed alpha
Helix 10
AB1
A
156 173Right-handed alpha
Helix 11
AB2
A
190 192Right-handed 310
Helix 12
AB3
A
193 205Right-handed alpha
Helix 13
AB4
A
225 237Right-handed alpha
Helix 14
AB5
A
253 266Right-handed alpha
Helix 15
AB6
A
267 272Right-handed alpha
Helix 16
AB7
A
295 300Right-handed alpha
Helix 17
AB8
A
302 309Right-handed alpha
Helix 18
AB9
A
311 322Right-handed alpha
Helix 19
AC1
A
329 342Right-handed alpha
Helix 20
AC2
A
348 350Right-handed 310
Helix 21
AC3
A
426 430Right-handed 310
Helix 22
AC4
A
482 493Right-handed alpha
Helix 23
AC5
A
501 521Right-handed alpha
Helix 24
AC6
A
536 545Right-handed alpha
Helix 25
AC7
B
3 31Right-handed alpha
Helix 26
AC8
B
37 46Right-handed alpha
Helix 27
AC9
B
64 69Right-handed alpha
Helix 28
AD1
B
81 87Right-handed alpha
Helix 29
AD2
B
87 99Right-handed alpha
Helix 30
AD3
B
117 126Right-handed alpha
Helix 31
AD4
B
127 130Right-handed 310
Helix 32
AD5
B
139 145Right-handed alpha
Helix 33
AD6
B
156 173Right-handed alpha
Helix 34
AD7
B
190 192Right-handed 310
Helix 35
AD8
B
193 205Right-handed alpha
Helix 36
AD9
B
225 237Right-handed alpha
Helix 37
AE1
B
253 266Right-handed alpha
Helix 38
AE2
B
267 274Right-handed alpha
Helix 39
AE3
B
295 301Right-handed alpha
Helix 40
AE4
B
302 309Right-handed alpha
Helix 41
AE5
B
311 322Right-handed alpha
Helix 42
AE6
B
329 342Right-handed alpha
Helix 43
AE7
B
348 350Right-handed 310
Helix 44
AE8
B
367 371Right-handed 310
Helix 45
AE9
B
426 430Right-handed 310
Helix 46
AF1
B
482 494Right-handed alpha
Helix 47
AF2
B
501 521Right-handed alpha
Helix 48
AF3
B
536 545Right-handed alpha
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There are 4 sheets in PDB entry 9VP6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 151first strand
Strand 2
A
106 111parallel
Strand 3
A
71 77parallel
Strand 4
A
181 187parallel
Strand 5
A
214 218parallel
Strand 6
A
245 247parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 469first strand
Strand 2
A
444 452anti-parallel
Strand 3
A
434 440anti-parallel
Strand 4
A
412 419anti-parallel
Strand 5
A
279 287anti-parallel
Strand 6
A
399 405parallel
Strand 7
A
383 389anti-parallel
Strand 8
A
352 358anti-parallel
Strand 9
A
527 530parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 151first strand
Strand 2
B
106 111parallel
Strand 3
B
72 77parallel
Strand 4
B
182 187parallel
Strand 5
B
214 218parallel
Strand 6
B
245 247parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
463 469first strand
Strand 2
B
444 452anti-parallel
Strand 3
B
434 440anti-parallel
Strand 4
B
412 419anti-parallel
Strand 5
B
279 287anti-parallel
Strand 6
B
400 405parallel
Strand 7
B
383 388anti-parallel
Strand 8
B
352 358anti-parallel
Strand 9
B
527 530parallel
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