Analysis of interatomic Contacts of Structural Units in PDB entry:
9VPA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VPA entry

There is 1 chain in PDB entry 9VPA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 14TRP 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9VPA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 34Right-handed 310
Helix 2
AA2
A
63 67Right-handed 310
Helix 3
AA3
A
185 197Right-handed alpha
Helix 4
AA4
A
198 203Right-handed alpha
Helix 5
AA5
A
204 206Right-handed 310
Helix 6
AA6
A
217 220Right-handed 310
Helix 7
AA7
A
232 246Right-handed alpha
Helix 8
AA8
A
281 288Right-handed alpha
Helix 9
AA9
A
289 293Right-handed 310
Helix 10
AB1
A
302 321Right-handed alpha
Helix 11
AB2
A
326 330Right-handed 310
Helix 12
AB3
A
332 336Right-handed 310
Helix 13
AB4
A
344 353Right-handed alpha
Helix 14
AB5
A
354 358Right-handed 310
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There are 7 sheets in PDB entry 9VPA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 92first strand
Strand 2
A
19 26anti-parallel
Strand 3
A
379 387parallel
Strand 4
A
166 172anti-parallel
Strand 5
A
177 181anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
50 53anti-parallel
Strand 3
A
36 43anti-parallel
Strand 4
A
82 83anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
50 53anti-parallel
Strand 3
A
36 43anti-parallel
Strand 4
A
95 104anti-parallel
Strand 5
A
138 147anti-parallel
Strand 6
A
151 155anti-parallel
Strand 7
A
373 376anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
75 77anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
120 123anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
214 215anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 252first strand
Strand 2
A
255 262anti-parallel
Strand 3
A
265 269anti-parallel
Strand 4
A
274 277anti-parallel
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