Analysis of interatomic Contacts of Structural Units in PDB entry:
9VPF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VPF entry

There are 4 chains in PDB entry 9VPF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 4	GLY 363
B	SER 4	ALA 362
C	SER 4	ALA 362
D	SER 4	ALA 362

There are 62 helices in PDB entry 9VPF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	26	Right-handed alpha
Helix 2	AA2	A	65	87	Right-handed alpha
Helix 3	AA3	A	108	114	Right-handed 310
Helix 4	AA4	A	121	125	Right-handed 310
Helix 5	AA5	A	142	157	Right-handed alpha
Helix 6	AA6	A	170	175	Right-handed alpha
Helix 7	AA7	A	175	183	Right-handed alpha
Helix 8	AA8	A	193	200	Right-handed 310
Helix 9	AA9	A	202	207	Right-handed alpha
Helix 10	AB1	A	270	285	Right-handed alpha
Helix 11	AB2	A	286	289	Right-handed 310
Helix 12	AB3	A	290	294	Right-handed 310
Helix 13	AB4	A	297	308	Right-handed alpha
Helix 14	AB5	A	342	344	Right-handed 310
Helix 15	AB6	A	345	363	Right-handed alpha
Helix 16	AB7	B	13	27	Right-handed alpha
Helix 17	AB8	B	48	52	Right-handed 310
Helix 18	AB9	B	65	87	Right-handed alpha
Helix 19	AC1	B	108	114	Right-handed 310
Helix 20	AC2	B	121	125	Right-handed 310
Helix 21	AC3	B	142	157	Right-handed alpha
Helix 22	AC4	B	170	175	Right-handed alpha
Helix 23	AC5	B	175	183	Right-handed alpha
Helix 24	AC6	B	193	200	Right-handed 310
Helix 25	AC7	B	202	208	Right-handed alpha
Helix 26	AC8	B	270	285	Right-handed alpha
Helix 27	AC9	B	286	289	Right-handed 310
Helix 28	AD1	B	290	294	Right-handed 310
Helix 29	AD2	B	297	307	Right-handed alpha
Helix 30	AD3	B	342	344	Right-handed 310
Helix 31	AD4	B	345	362	Right-handed alpha
Helix 32	AD5	C	13	27	Right-handed alpha
Helix 33	AD6	C	48	52	Right-handed 310
Helix 34	AD7	C	65	87	Right-handed alpha
Helix 35	AD8	C	108	114	Right-handed 310
Helix 36	AD9	C	121	125	Right-handed 310
Helix 37	AE1	C	142	157	Right-handed alpha
Helix 38	AE2	C	170	175	Right-handed alpha
Helix 39	AE3	C	175	183	Right-handed alpha
Helix 40	AE4	C	193	200	Right-handed 310
Helix 41	AE5	C	202	208	Right-handed alpha
Helix 42	AE6	C	270	285	Right-handed alpha
Helix 43	AE7	C	286	289	Right-handed 310
Helix 44	AE8	C	290	294	Right-handed 310
Helix 45	AE9	C	297	307	Right-handed alpha
Helix 46	AF1	C	342	344	Right-handed 310
Helix 47	AF2	C	345	362	Right-handed alpha
Helix 48	AF3	D	13	27	Right-handed alpha
Helix 49	AF4	D	65	87	Right-handed alpha
Helix 50	AF5	D	108	114	Right-handed 310
Helix 51	AF6	D	121	125	Right-handed 310
Helix 52	AF7	D	142	157	Right-handed alpha
Helix 53	AF8	D	170	175	Right-handed alpha
Helix 54	AF9	D	175	183	Right-handed alpha
Helix 55	AG1	D	193	200	Right-handed 310
Helix 56	AG2	D	202	208	Right-handed alpha
Helix 57	AG3	D	270	285	Right-handed alpha
Helix 58	AG4	D	286	289	Right-handed 310
Helix 59	AG5	D	290	294	Right-handed 310
Helix 60	AG6	D	297	307	Right-handed alpha
Helix 61	AG7	D	342	344	Right-handed 310
Helix 62	AG8	D	345	362	Right-handed alpha

There are 12 sheets in PDB entry 9VPF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	163	first strand
Strand 2	A	31	36	parallel
Strand 3	A	6	10	parallel
Strand 4	A	188	191	parallel
Strand 5	A	334	340	parallel
Strand 6	A	325	331	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	132	141	anti-parallel
Strand 3	A	92	102	anti-parallel
Strand 4	A	227	232	parallel
Strand 5	A	242	248	anti-parallel
Strand 6	A	253	257	anti-parallel
Strand 7	A	209	220	anti-parallel
Strand 8	A	261	262	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	132	141	anti-parallel
Strand 3	A	92	102	anti-parallel
Strand 4	A	227	232	parallel
Strand 5	A	242	248	anti-parallel
Strand 6	A	253	257	anti-parallel
Strand 7	A	209	220	anti-parallel
Strand 8	A	309	320	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	163	first strand
Strand 2	B	32	36	parallel
Strand 3	B	7	10	parallel
Strand 4	B	188	191	parallel
Strand 5	B	334	340	parallel
Strand 6	B	325	331	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	120	first strand
Strand 2	B	132	141	anti-parallel
Strand 3	B	92	101	anti-parallel
Strand 4	B	227	232	parallel
Strand 5	B	242	248	anti-parallel
Strand 6	B	253	257	anti-parallel
Strand 7	B	209	220	anti-parallel
Strand 8	B	261	262	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	120	first strand
Strand 2	B	132	141	anti-parallel
Strand 3	B	92	101	anti-parallel
Strand 4	B	227	232	parallel
Strand 5	B	242	248	anti-parallel
Strand 6	B	253	257	anti-parallel
Strand 7	B	209	220	anti-parallel
Strand 8	B	309	320	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	163	first strand
Strand 2	C	32	36	parallel
Strand 3	C	7	10	parallel
Strand 4	C	188	191	parallel
Strand 5	C	334	340	parallel
Strand 6	C	325	331	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	119	first strand
Strand 2	C	132	141	anti-parallel
Strand 3	C	92	102	anti-parallel
Strand 4	C	227	232	parallel
Strand 5	C	242	248	anti-parallel
Strand 6	C	253	257	anti-parallel
Strand 7	C	209	220	anti-parallel
Strand 8	C	261	262	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	119	first strand
Strand 2	C	132	141	anti-parallel
Strand 3	C	92	102	anti-parallel
Strand 4	C	227	232	parallel
Strand 5	C	242	248	anti-parallel
Strand 6	C	253	257	anti-parallel
Strand 7	C	209	220	anti-parallel
Strand 8	C	309	320	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	163	first strand
Strand 2	D	32	36	parallel
Strand 3	D	7	10	parallel
Strand 4	D	188	191	parallel
Strand 5	D	334	340	parallel
Strand 6	D	325	331	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	119	first strand
Strand 2	D	132	141	anti-parallel
Strand 3	D	92	102	anti-parallel
Strand 4	D	227	232	parallel
Strand 5	D	242	248	anti-parallel
Strand 6	D	253	257	anti-parallel
Strand 7	D	209	220	anti-parallel
Strand 8	D	261	262	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	119	first strand
Strand 2	D	132	141	anti-parallel
Strand 3	D	92	102	anti-parallel
Strand 4	D	227	232	parallel
Strand 5	D	242	248	anti-parallel
Strand 6	D	253	257	anti-parallel
Strand 7	D	209	220	anti-parallel
Strand 8	D	309	320	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VPF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VPF