Analysis of interatomic Contacts of Structural Units in PDB entry:
9VQ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VQ4 entry

There are 2 chains in PDB entry 9VQ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 131PRO 661
B
 ARG 131PRO 661
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 9VQ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
147 153Right-handed alpha
Helix 2
AA2
A
153 168Right-handed alpha
Helix 3
AA3
A
182 193Right-handed alpha
Helix 4
AA4
A
195 214Right-handed alpha
Helix 5
AA5
A
228 243Right-handed alpha
Helix 6
AA6
A
264 266Right-handed 310
Helix 7
AA7
A
293 297Right-handed 310
Helix 8
AA8
A
321 323Right-handed 310
Helix 9
AA9
A
324 335Right-handed alpha
Helix 10
AB1
A
338 350Right-handed alpha
Helix 11
AB2
A
382 400Right-handed alpha
Helix 12
AB3
A
401 410Right-handed alpha
Helix 13
AB4
A
421 427Right-handed alpha
Helix 14
AB5
A
427 437Right-handed alpha
Helix 15
AB6
A
468 473Right-handed alpha
Helix 16
AB7
A
477 488Right-handed alpha
Helix 17
AB8
A
498 509Right-handed alpha
Helix 18
AB9
A
513 529Right-handed alpha
Helix 19
AC1
A
540 560Right-handed alpha
Helix 20
AC2
A
562 566Right-handed 310
Helix 21
AC3
A
567 592Right-handed alpha
Helix 22
AC4
A
596 618Right-handed alpha
Helix 23
AC5
A
621 632Right-handed alpha
Helix 24
AC6
B
147 153Right-handed alpha
Helix 25
AC7
B
153 168Right-handed alpha
Helix 26
AC8
B
182 193Right-handed alpha
Helix 27
AC9
B
195 214Right-handed alpha
Helix 28
AD1
B
228 243Right-handed alpha
Helix 29
AD2
B
264 266Right-handed 310
Helix 30
AD3
B
293 297Right-handed 310
Helix 31
AD4
B
321 323Right-handed 310
Helix 32
AD5
B
324 335Right-handed alpha
Helix 33
AD6
B
338 350Right-handed alpha
Helix 34
AD7
B
382 400Right-handed alpha
Helix 35
AD8
B
401 410Right-handed alpha
Helix 36
AD9
B
421 427Right-handed alpha
Helix 37
AE1
B
427 437Right-handed alpha
Helix 38
AE2
B
468 473Right-handed alpha
Helix 39
AE3
B
477 488Right-handed alpha
Helix 40
AE4
B
498 509Right-handed alpha
Helix 41
AE5
B
513 529Right-handed alpha
Helix 42
AE6
B
540 561Right-handed alpha
Helix 43
AE7
B
562 566Right-handed 310
Helix 44
AE8
B
567 592Right-handed alpha
Helix 45
AE9
B
596 618Right-handed alpha
Helix 46
AF1
B
621 632Right-handed alpha
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There are 12 sheets in PDB entry 9VQ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 222first strand
Strand 2
A
172 177parallel
Strand 3
A
133 137parallel
Strand 4
A
412 418parallel
Strand 5
A
445 449parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
247 256anti-parallel
Strand 3
A
310 319anti-parallel
Strand 4
A
356 357anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 271first strand
Strand 2
A
298 302anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 281first strand
Strand 2
A
284 285anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 360first strand
Strand 2
A
378 381anti-parallel
Strand 3
A
367 369anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 458first strand
Strand 2
A
453 454anti-parallel
Strand 3
A
496 497parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 222first strand
Strand 2
B
172 177parallel
Strand 3
B
133 137parallel
Strand 4
B
412 418parallel
Strand 5
B
445 449parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 262first strand
Strand 2
B
247 256anti-parallel
Strand 3
B
310 319anti-parallel
Strand 4
B
356 357anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 271first strand
Strand 2
B
298 302anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
280 281first strand
Strand 2
B
284 285anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
359 360first strand
Strand 2
B
378 381anti-parallel
Strand 3
B
367 369anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
457 458first strand
Strand 2
B
453 454anti-parallel
Strand 3
B
496 497parallel
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