Analysis of interatomic Contacts of Structural Units in PDB entry:
9VQK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VQK entry

There are 4 chains in PDB entry 9VQK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	TYR 319
D	SER 2	ARG 320
F	SER 2	ARG 320
H	SER 3	ARG 320

There are 44 helices in PDB entry 9VQK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	21	Right-handed alpha
Helix 2	AA2	A	48	53	Right-handed alpha
Helix 3	AA3	A	70	86	Right-handed alpha
Helix 4	AA4	A	92	108	Right-handed alpha
Helix 5	AA5	A	129	133	Right-handed 310
Helix 6	AA6	A	149	156	Right-handed alpha
Helix 7	AA7	A	182	195	Right-handed alpha
Helix 8	AA8	A	235	248	Right-handed alpha
Helix 9	AA9	A	258	265	Right-handed alpha
Helix 10	AB1	A	294	307	Right-handed alpha
Helix 11	AB2	A	308	310	Right-handed 310
Helix 12	AB3	D	3	21	Right-handed alpha
Helix 13	AB4	D	48	53	Right-handed alpha
Helix 14	AB5	D	70	85	Right-handed alpha
Helix 15	AB6	D	92	108	Right-handed alpha
Helix 16	AB7	D	129	133	Right-handed 310
Helix 17	AB8	D	149	156	Right-handed alpha
Helix 18	AB9	D	182	195	Right-handed alpha
Helix 19	AC1	D	235	248	Right-handed alpha
Helix 20	AC2	D	258	264	Right-handed alpha
Helix 21	AC3	D	294	307	Right-handed alpha
Helix 22	AC4	D	308	312	Right-handed 310
Helix 23	AC5	F	3	20	Right-handed alpha
Helix 24	AC6	F	48	53	Right-handed alpha
Helix 25	AC7	F	70	86	Right-handed alpha
Helix 26	AC8	F	92	108	Right-handed alpha
Helix 27	AC9	F	129	133	Right-handed 310
Helix 28	AD1	F	149	156	Right-handed alpha
Helix 29	AD2	F	182	195	Right-handed alpha
Helix 30	AD3	F	235	248	Right-handed alpha
Helix 31	AD4	F	258	265	Right-handed alpha
Helix 32	AD5	F	294	307	Right-handed alpha
Helix 33	AD6	F	308	310	Right-handed 310
Helix 34	AD7	H	4	21	Right-handed alpha
Helix 35	AD8	H	48	53	Right-handed alpha
Helix 36	AD9	H	70	85	Right-handed alpha
Helix 37	AE1	H	92	108	Right-handed alpha
Helix 38	AE2	H	129	133	Right-handed 310
Helix 39	AE3	H	149	156	Right-handed alpha
Helix 40	AE4	H	182	195	Right-handed alpha
Helix 41	AE5	H	235	248	Right-handed alpha
Helix 42	AE6	H	258	265	Right-handed alpha
Helix 43	AE7	H	294	307	Right-handed alpha
Helix 44	AE8	H	308	312	Right-handed 310

There are 18 sheets in PDB entry 9VQK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	29	32	anti-parallel
Strand 3	A	136	143	anti-parallel
Strand 4	A	112	119	anti-parallel
Strand 5	A	56	59	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	29	32	anti-parallel
Strand 3	A	136	143	anti-parallel
Strand 4	A	112	119	anti-parallel
Strand 5	A	62	64	anti-parallel
Strand 6	A	67	69	anti-parallel
Strand 7	A	314	316	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	D	43	45	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	201	first strand
Strand 2	A	157	161	parallel
Strand 3	A	276	283	parallel
Strand 4	A	267	272	anti-parallel
Strand 5	A	215	221	anti-parallel
Strand 6	A	224	228	anti-parallel
Strand 7	A	252	255	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	212	first strand
Strand 2	A	215	221	anti-parallel
Strand 3	A	267	272	anti-parallel
Strand 4	A	276	283	anti-parallel
Strand 5	A	286	287	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	38	first strand
Strand 2	D	29	32	anti-parallel
Strand 3	D	136	143	anti-parallel
Strand 4	D	112	119	anti-parallel
Strand 5	D	56	59	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	38	first strand
Strand 2	D	29	32	anti-parallel
Strand 3	D	136	143	anti-parallel
Strand 4	D	112	119	anti-parallel
Strand 5	D	62	64	anti-parallel
Strand 6	D	67	69	anti-parallel
Strand 7	D	314	316	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	201	first strand
Strand 2	D	157	161	parallel
Strand 3	D	276	283	parallel
Strand 4	D	267	272	anti-parallel
Strand 5	D	215	221	anti-parallel
Strand 6	D	224	228	anti-parallel
Strand 7	D	252	255	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	211	212	first strand
Strand 2	D	215	221	anti-parallel
Strand 3	D	267	272	anti-parallel
Strand 4	D	276	283	anti-parallel
Strand 5	D	286	287	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	38	first strand
Strand 2	F	29	32	anti-parallel
Strand 3	F	136	143	anti-parallel
Strand 4	F	112	119	anti-parallel
Strand 5	F	56	59	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	38	first strand
Strand 2	F	29	32	anti-parallel
Strand 3	F	136	143	anti-parallel
Strand 4	F	112	119	anti-parallel
Strand 5	F	62	64	anti-parallel
Strand 6	F	67	69	anti-parallel
Strand 7	F	314	316	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	45	first strand
Strand 2	H	43	45	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	199	201	first strand
Strand 2	F	157	161	parallel
Strand 3	F	276	283	parallel
Strand 4	F	267	272	anti-parallel
Strand 5	F	215	221	anti-parallel
Strand 6	F	224	228	anti-parallel
Strand 7	F	252	255	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	211	212	first strand
Strand 2	F	215	221	anti-parallel
Strand 3	F	267	272	anti-parallel
Strand 4	F	276	283	anti-parallel
Strand 5	F	286	287	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	35	38	first strand
Strand 2	H	29	32	anti-parallel
Strand 3	H	136	143	anti-parallel
Strand 4	H	112	119	anti-parallel
Strand 5	H	56	59	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	35	38	first strand
Strand 2	H	29	32	anti-parallel
Strand 3	H	136	143	anti-parallel
Strand 4	H	112	119	anti-parallel
Strand 5	H	62	64	anti-parallel
Strand 6	H	67	69	anti-parallel
Strand 7	H	314	316	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	252	255	first strand
Strand 2	H	224	228	parallel
Strand 3	H	215	221	anti-parallel
Strand 4	H	209	212	anti-parallel
Strand 5	H	199	203	anti-parallel
Strand 6	H	157	161	parallel
Strand 7	H	276	283	parallel
Strand 8	H	286	287	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	252	255	first strand
Strand 2	H	224	228	parallel
Strand 3	H	215	221	anti-parallel
Strand 4	H	267	272	anti-parallel
Strand 5	H	276	283	anti-parallel
Strand 6	H	286	287	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VQK

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VQK