Analysis of interatomic Contacts of Structural Units in PDB entry:
9VQP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VQP entry

There are 4 chains in PDB entry 9VQP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6GLY 391
B
 PRO 7LYS 486
C
 PRO 7LYS 486
D
 PRO 7LYS 486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 9VQP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 26Right-handed alpha
Helix 2
AA2
A
39 66Right-handed alpha
Helix 3
AA3
A
71 96Right-handed alpha
Helix 4
AA4
A
96 116Right-handed alpha
Helix 5
AA5
A
118 160Right-handed alpha
Helix 6
AA6
A
179 214Right-handed alpha
Helix 7
AA7
A
214 236Right-handed alpha
Helix 8
AA8
A
238 292Right-handed alpha
Helix 9
AA9
A
296 331Right-handed alpha
Helix 10
AB1
A
334 338Right-handed 310
Helix 11
AB2
A
339 344Right-handed alpha
Helix 12
AB3
A
344 355Right-handed alpha
Helix 13
AB4
A
368 391Right-handed alpha
Helix 14
AB5
B
12 17Right-handed alpha
Helix 15
AB6
B
17 27Right-handed alpha
Helix 16
AB7
B
38 67Right-handed alpha
Helix 17
AB8
B
70 97Right-handed alpha
Helix 18
AB9
B
97 106Right-handed alpha
Helix 19
AC1
B
107 110Right-handed 310
Helix 20
AC2
B
117 154Right-handed alpha
Helix 21
AC3
B
192 246Right-handed alpha
Helix 22
AC4
B
328 359Right-handed alpha
Helix 23
AC5
B
359 382Right-handed alpha
Helix 24
AC6
B
388 429Right-handed alpha
Helix 25
AC7
B
430 434Right-handed 310
Helix 26
AC8
B
435 449Right-handed alpha
Helix 27
AC9
B
464 486Right-handed alpha
Helix 28
AD1
C
12 17Right-handed alpha
Helix 29
AD2
C
17 27Right-handed alpha
Helix 30
AD3
C
38 67Right-handed alpha
Helix 31
AD4
C
70 97Right-handed alpha
Helix 32
AD5
C
97 106Right-handed alpha
Helix 33
AD6
C
117 154Right-handed alpha
Helix 34
AD7
C
192 246Right-handed alpha
Helix 35
AD8
C
328 382Right-handed alpha
Helix 36
AD9
C
388 428Right-handed alpha
Helix 37
AE1
C
430 434Right-handed 310
Helix 38
AE2
C
435 449Right-handed alpha
Helix 39
AE3
C
464 486Right-handed alpha
Helix 40
AE4
D
12 17Right-handed alpha
Helix 41
AE5
D
17 27Right-handed alpha
Helix 42
AE6
D
38 67Right-handed alpha
Helix 43
AE7
D
70 97Right-handed alpha
Helix 44
AE8
D
97 106Right-handed alpha
Helix 45
AE9
D
114 116Right-handed 310
Helix 46
AF1
D
117 156Right-handed alpha
Helix 47
AF2
D
191 246Right-handed alpha
Helix 48
AF3
D
328 382Right-handed alpha
Helix 49
AF4
D
388 429Right-handed alpha
Helix 50
AF5
D
430 434Right-handed 310
Helix 51
AF6
D
435 450Right-handed alpha
Helix 52
AF7
D
464 486Right-handed alpha
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There are 3 sheets in PDB entry 9VQP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 165first strand
Strand 2
B
170 175anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 165first strand
Strand 2
C
170 175anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
160 165first strand
Strand 2
D
170 175anti-parallel
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