Analysis of interatomic Contacts of Structural Units in PDB entry:
9VRB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VRB entry

There is 1 chain in PDB entry 9VRB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 227THR 1500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 54 helices in PDB entry 9VRB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
235 242Right-handed alpha
Helix 2
AA2
A
245 255Right-handed alpha
Helix 3
AA3
A
258 262Right-handed 310
Helix 4
AA4
A
266 269Right-handed 310
Helix 5
AA5
A
270 284Right-handed alpha
Helix 6
AA6
A
284 289Right-handed alpha
Helix 7
AA7
A
295 304Right-handed alpha
Helix 8
AA8
A
304 323Right-handed alpha
Helix 9
AA9
A
323 328Right-handed alpha
Helix 10
AB1
A
328 338Right-handed alpha
Helix 11
AB2
A
346 391Right-handed alpha
Helix 12
AB3
A
396 401Right-handed alpha
Helix 13
AB4
A
402 419Right-handed alpha
Helix 14
AB5
A
420 424Right-handed 310
Helix 15
AB6
A
425 445Right-handed alpha
Helix 16
AB7
A
448 462Right-handed alpha
Helix 17
AB8
A
463 494Right-handed alpha
Helix 18
AB9
A
494 502Right-handed alpha
Helix 19
AC1
A
503 554Right-handed alpha
Helix 20
AC2
A
559 602Right-handed alpha
Helix 21
AC3
A
663 673Right-handed alpha
Helix 22
AC4
A
702 708Right-handed alpha
Helix 23
AC5
A
713 724Right-handed alpha
Helix 24
AC6
A
726 733Right-handed alpha
Helix 25
AC7
A
735 738Right-handed 310
Helix 26
AC8
A
742 746Right-handed 310
Helix 27
AC9
A
749 764Right-handed alpha
Helix 28
AD1
A
779 791Right-handed alpha
Helix 29
AD2
A
806 810Right-handed 310
Helix 30
AD3
A
830 834Right-handed 310
Helix 31
AD4
A
838 852Right-handed alpha
Helix 32
AD5
A
925 935Right-handed alpha
Helix 33
AD6
A
937 940Right-handed 310
Helix 34
AD7
A
941 967Right-handed alpha
Helix 35
AD8
A
979 1025Right-handed alpha
Helix 36
AD9
A
1028 1035Right-handed alpha
Helix 37
AE1
A
1036 1054Right-handed alpha
Helix 38
AE2
A
1055 1080Right-handed alpha
Helix 39
AE3
A
1083 1129Right-handed alpha
Helix 40
AE4
A
1129 1136Right-handed alpha
Helix 41
AE5
A
1138 1189Right-handed alpha
Helix 42
AE6
A
1195 1207Right-handed alpha
Helix 43
AE7
A
1208 1237Right-handed alpha
Helix 44
AE8
A
1301 1309Right-handed alpha
Helix 45
AE9
A
1331 1337Right-handed alpha
Helix 46
AF1
A
1353 1358Right-handed alpha
Helix 47
AF2
A
1364 1375Right-handed alpha
Helix 48
AF3
A
1377 1383Right-handed alpha
Helix 49
AF4
A
1393 1397Right-handed 310
Helix 50
AF5
A
1400 1415Right-handed alpha
Helix 51
AF6
A
1430 1445Right-handed alpha
Helix 52
AF7
A
1456 1461Right-handed alpha
Helix 53
AF8
A
1479 1486Right-handed alpha
Helix 54
AF9
A
1489 1500Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 9VRB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
612 613first strand
Strand 2
A
677 684parallel
Strand 3
A
621 630anti-parallel
Strand 4
A
641 649anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
688 691first strand
Strand 2
A
768 772parallel
Strand 3
A
799 803parallel
Strand 4
A
653 658parallel
Strand 5
A
815 820parallel
Strand 6
A
823 828anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
700 701first strand
Strand 2
A
740 741anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1279 1286first strand
Strand 2
A
1262 1269anti-parallel
Strand 3
A
1317 1322anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1339 1342first strand
Strand 2
A
1419 1423parallel
Strand 3
A
1449 1453parallel
Strand 4
A
1291 1296parallel
Strand 5
A
1465 1470parallel
Strand 6
A
1473 1478anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1351 1352first strand
Strand 2
A
1391 1392anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il