Analysis of interatomic Contacts of Structural Units in PDB entry:
9VRC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VRC entry

There is 1 chain in PDB entry 9VRC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 295ARG 1482
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9VRC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
295 304Right-handed alpha
Helix 2
AA2
A
305 338Right-handed alpha
Helix 3
AA3
A
344 391Right-handed alpha
Helix 4
AA4
A
412 420Right-handed alpha
Helix 5
AA5
A
421 427Right-handed 310
Helix 6
AA6
A
428 446Right-handed alpha
Helix 7
AA7
A
448 494Right-handed alpha
Helix 8
AA8
A
494 501Right-handed alpha
Helix 9
AA9
A
504 555Right-handed alpha
Helix 10
AB1
A
559 602Right-handed alpha
Helix 11
AB2
A
926 935Right-handed alpha
Helix 12
AB3
A
936 940Right-handed 310
Helix 13
AB4
A
941 967Right-handed alpha
Helix 14
AB5
A
979 1025Right-handed alpha
Helix 15
AB6
A
1028 1035Right-handed alpha
Helix 16
AB7
A
1036 1053Right-handed alpha
Helix 17
AB8
A
1055 1080Right-handed alpha
Helix 18
AB9
A
1166 1188Right-handed alpha
Helix 19
AC1
A
1195 1207Right-handed alpha
Helix 20
AC2
A
1208 1227Right-handed alpha
Helix 21
AC3
A
1227 1237Right-handed alpha
Helix 22
AC4
A
1301 1310Right-handed alpha
Helix 23
AC5
A
1331 1337Right-handed alpha
Helix 24
AC6
A
1352 1358Right-handed alpha
Helix 25
AC7
A
1364 1375Right-handed alpha
Helix 26
AC8
A
1377 1384Right-handed alpha
Helix 27
AC9
A
1400 1415Right-handed alpha
Helix 28
AD1
A
1431 1445Right-handed alpha
Helix 29
AD2
A
1457 1461Right-handed 310
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There are 2 sheets in PDB entry 9VRC. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1262 1266first strand
Strand 2
A
1319 1322anti-parallel
Strand 3
A
1325 1326anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1340 1342first strand
Strand 2
A
1419 1423parallel
Strand 3
A
1449 1453parallel
Strand 4
A
1291 1294parallel
Strand 5
A
1465 1470parallel
Strand 6
A
1473 1476anti-parallel
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