Analysis of interatomic Contacts of Structural Units in PDB entry:
9VRD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VRD entry

There is 1 chain in PDB entry 9VRD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 227GLU 1497
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 9VRD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
229 234Right-handed 310
Helix 2
AA2
A
235 242Right-handed alpha
Helix 3
AA3
A
245 255Right-handed alpha
Helix 4
AA4
A
258 262Right-handed 310
Helix 5
AA5
A
270 289Right-handed alpha
Helix 6
AA6
A
295 301Right-handed alpha
Helix 7
AA7
A
306 323Right-handed alpha
Helix 8
AA8
A
328 338Right-handed alpha
Helix 9
AA9
A
344 392Right-handed alpha
Helix 10
AB1
A
394 400Right-handed alpha
Helix 11
AB2
A
402 412Right-handed alpha
Helix 12
AB3
A
412 419Right-handed alpha
Helix 13
AB4
A
420 424Right-handed 310
Helix 14
AB5
A
425 445Right-handed alpha
Helix 15
AB6
A
448 494Right-handed alpha
Helix 16
AB7
A
494 502Right-handed alpha
Helix 17
AB8
A
503 554Right-handed alpha
Helix 18
AB9
A
559 579Right-handed alpha
Helix 19
AC1
A
579 602Right-handed alpha
Helix 20
AC2
A
664 673Right-handed alpha
Helix 21
AC3
A
702 708Right-handed alpha
Helix 22
AC4
A
713 723Right-handed alpha
Helix 23
AC5
A
726 732Right-handed alpha
Helix 24
AC6
A
735 738Right-handed 310
Helix 25
AC7
A
749 765Right-handed alpha
Helix 26
AC8
A
779 790Right-handed alpha
Helix 27
AC9
A
926 935Right-handed alpha
Helix 28
AD1
A
937 940Right-handed 310
Helix 29
AD2
A
941 968Right-handed alpha
Helix 30
AD3
A
979 1025Right-handed alpha
Helix 31
AD4
A
1028 1035Right-handed alpha
Helix 32
AD5
A
1036 1054Right-handed alpha
Helix 33
AD6
A
1055 1080Right-handed alpha
Helix 34
AD7
A
1082 1116Right-handed alpha
Helix 35
AD8
A
1117 1129Right-handed alpha
Helix 36
AD9
A
1129 1137Right-handed alpha
Helix 37
AE1
A
1138 1188Right-handed alpha
Helix 38
AE2
A
1195 1207Right-handed alpha
Helix 39
AE3
A
1208 1227Right-handed alpha
Helix 40
AE4
A
1227 1236Right-handed alpha
Helix 41
AE5
A
1303 1310Right-handed alpha
Helix 42
AE6
A
1328 1330Right-handed 310
Helix 43
AE7
A
1331 1337Right-handed alpha
Helix 44
AE8
A
1353 1358Right-handed alpha
Helix 45
AE9
A
1364 1375Right-handed alpha
Helix 46
AF1
A
1377 1383Right-handed alpha
Helix 47
AF2
A
1386 1389Right-handed 310
Helix 48
AF3
A
1393 1397Right-handed 310
Helix 49
AF4
A
1400 1416Right-handed alpha
Helix 50
AF5
A
1430 1445Right-handed alpha
Helix 51
AF6
A
1456 1462Right-handed alpha
Helix 52
AF7
A
1479 1486Right-handed alpha
Helix 53
AF8
A
1489 1497Right-handed alpha
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There are 6 sheets in PDB entry 9VRD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
646 648first strand
Strand 2
A
623 626anti-parallel
Strand 3
A
681 684anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
654 655first strand
Strand 2
A
799 802parallel
Strand 3
A
768 771parallel
Strand 4
A
688 691parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
700 701first strand
Strand 2
A
740 741anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1285 1286first strand
Strand 2
A
1262 1268anti-parallel
Strand 3
A
1317 1322anti-parallel
Strand 4
A
1325 1326anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1340 1342first strand
Strand 2
A
1419 1423parallel
Strand 3
A
1449 1453parallel
Strand 4
A
1292 1296parallel
Strand 5
A
1465 1470parallel
Strand 6
A
1473 1478anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1351 1352first strand
Strand 2
A
1391 1392anti-parallel
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