Analysis of interatomic Contacts of Structural Units in PDB entry:
9VRQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VRQ entry

There are 4 chains in PDB entry 9VRQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 71LYS 170
C
 T 4001 G 4021
D
 A 5001 T 5021
N
 ALA 392VAL 678
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 9VRQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 88Right-handed alpha
Helix 2
AA2
A
94 106Right-handed alpha
Helix 3
AA3
A
107 111Right-handed 310
Helix 4
AA4
A
112 127Right-handed alpha
Helix 5
AA5
N
504 508Right-handed 310
Helix 6
AA6
N
522 527Right-handed alpha
Helix 7
AA7
N
570 577Right-handed alpha
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There are 6 sheets in PDB entry 9VRQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
146 148anti-parallel
Strand 3
A
130 132anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
404 405first strand
Strand 2
N
408 414anti-parallel
Strand 3
N
442 446anti-parallel
Strand 4
N
510 512anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
423 424first strand
Strand 2
N
516 520parallel
Strand 3
N
474 478anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
489 493first strand
Strand 2
N
496 503anti-parallel
Strand 3
N
454 462anti-parallel
Strand 4
N
541 551anti-parallel
Strand 5
N
557 563anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
489 493first strand
Strand 2
N
496 503anti-parallel
Strand 3
N
454 462anti-parallel
Strand 4
N
541 551anti-parallel
Strand 5
N
567 568anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
579 583first strand
Strand 2
N
595 601anti-parallel
Strand 3
N
637 641anti-parallel
Strand 4
N
620 630anti-parallel
Strand 5
N
608 614anti-parallel
Strand 6
N
654 661anti-parallel
Strand 7
N
671 676anti-parallel
Strand 8
N
587 589parallel
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