Analysis of interatomic Contacts of Structural Units in PDB entry:
9VS3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VS3 entry

There is 1 chain in PDB entry 9VS3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3VAL 2103
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 85 helices in PDB entry 9VS3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 14Right-handed alpha
Helix 2
AA2
A
18 45Right-handed alpha
Helix 3
AA3
A
58 63Right-handed alpha
Helix 4
AA4
A
67 72Right-handed alpha
Helix 5
AA5
A
99 113Right-handed alpha
Helix 6
AA6
A
113 121Right-handed alpha
Helix 7
AA7
A
143 149Right-handed alpha
Helix 8
AA8
A
158 168Right-handed alpha
Helix 9
AA9
A
175 182Right-handed alpha
Helix 10
AB1
A
204 213Right-handed alpha
Helix 11
AB2
A
215 227Right-handed alpha
Helix 12
AB3
A
236 247Right-handed alpha
Helix 13
AB4
A
251 260Right-handed alpha
Helix 14
AB5
A
261 264Right-handed 310
Helix 15
AB6
A
273 292Right-handed alpha
Helix 16
AB7
A
319 333Right-handed alpha
Helix 17
AB8
A
340 352Right-handed alpha
Helix 18
AB9
A
356 361Right-handed alpha
Helix 19
AC1
A
447 465Right-handed alpha
Helix 20
AC2
A
475 480Right-handed alpha
Helix 21
AC3
A
482 487Right-handed alpha
Helix 22
AC4
A
489 501Right-handed alpha
Helix 23
AC5
A
502 523Right-handed alpha
Helix 24
AC6
A
599 607Right-handed alpha
Helix 25
AC7
A
607 620Right-handed alpha
Helix 26
AC8
A
627 639Right-handed alpha
Helix 27
AC9
A
643 651Right-handed alpha
Helix 28
AD1
A
653 661Right-handed alpha
Helix 29
AD2
A
666 675Right-handed alpha
Helix 30
AD3
A
681 697Right-handed alpha
Helix 31
AD4
A
698 702Right-handed 310
Helix 32
AD5
A
738 748Right-handed alpha
Helix 33
AD6
A
749 752Right-handed 310
Helix 34
AD7
A
766 782Right-handed alpha
Helix 35
AD8
A
796 815Right-handed alpha
Helix 36
AD9
A
818 827Right-handed alpha
Helix 37
AE1
A
831 835Right-handed 310
Helix 38
AE2
A
912 922Right-handed alpha
Helix 39
AE3
A
929 941Right-handed alpha
Helix 40
AE4
A
965 985Right-handed alpha
Helix 41
AE5
A
997 1024Right-handed alpha
Helix 42
AE6
A
1046 1049Right-handed 310
Helix 43
AE7
A
1050 1055Right-handed alpha
Helix 44
AE8
A
1061 1076Right-handed alpha
Helix 45
AE9
A
1083 1091Right-handed alpha
Helix 46
AF1
A
1101 1106Right-handed alpha
Helix 47
AF2
A
1125 1151Right-handed alpha
Helix 48
AF3
A
1181 1197Right-handed alpha
Helix 49
AF4
A
1229 1234Right-handed alpha
Helix 50
AF5
A
1244 1262Right-handed alpha
Helix 51
AF6
A
1265 1284Right-handed alpha
Helix 52
AF7
A
1317 1324Right-handed alpha
Helix 53
AF8
A
1326 1342Right-handed alpha
Helix 54
AF9
A
1343 1347Right-handed 310
Helix 55
AG1
A
1350 1357Right-handed alpha
Helix 56
AG2
A
1366 1378Right-handed alpha
Helix 57
AG3
A
1410 1415Right-handed alpha
Helix 58
AG4
A
1417 1428Right-handed alpha
Helix 59
AG5
A
1430 1442Right-handed alpha
Helix 60
AG6
A
1443 1447Right-handed 310
Helix 61
AG7
A
1452 1464Right-handed alpha
Helix 62
AG8
A
1467 1473Right-handed alpha
Helix 63
AG9
A
1479 1489Right-handed alpha
Helix 64
AH1
A
1525 1537Right-handed alpha
Helix 65
AH2
A
1542 1551Right-handed alpha
Helix 66
AH3
A
1556 1569Right-handed alpha
Helix 67
AH4
A
1627 1635Right-handed alpha
Helix 68
AH5
A
1636 1639Right-handed 310
Helix 69
AH6
A
1640 1646Right-handed alpha
Helix 70
AH7
A
1653 1676Right-handed alpha
Helix 71
AH8
A
1693 1705Right-handed alpha
Helix 72
AH9
A
1741 1754Right-handed alpha
Helix 73
AI1
A
1755 1759Right-handed 310
Helix 74
AI2
A
1760 1769Right-handed alpha
Helix 75
AI3
A
1777 1788Right-handed alpha
Helix 76
AI4
A
1789 1793Right-handed 310
Helix 77
AI5
A
1794 1801Right-handed alpha
Helix 78
AI6
A
1806 1814Right-handed alpha
Helix 79
AI7
A
1868 1881Right-handed alpha
Helix 80
AI8
A
1921 1927Right-handed alpha
Helix 81
AI9
A
1961 1966Right-handed 310
Helix 82
AJ1
A
1994 1996Right-handed 310
Helix 83
AJ2
A
2023 2029Right-handed alpha
Helix 84
AJ3
A
2031 2038Right-handed alpha
Helix 85
AJ4
A
2084 2103Right-handed alpha
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There are 16 sheets in PDB entry 9VS3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
88 94anti-parallel
Strand 3
A
124 131parallel
Strand 4
A
138 141anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
441 443parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 388first strand
Strand 2
A
391 393anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 534first strand
Strand 2
A
541 545anti-parallel
Strand 3
A
557 565anti-parallel
Strand 4
A
587 591anti-parallel
Strand 5
A
579 583anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 534first strand
Strand 2
A
541 545anti-parallel
Strand 3
A
557 565anti-parallel
Strand 4
A
595 597anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
728 729first strand
Strand 2
A
736 737anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
843 847first strand
Strand 2
A
907 911anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
963 964first strand
Strand 2
A
945 947anti-parallel
Strand 3
A
1079 1081parallel
Strand 4
A
1113 1115anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1158 1159first strand
Strand 2
A
1168 1171anti-parallel
Strand 3
A
1031 1035anti-parallel
Strand 4
A
1207 1209anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1212 1215first strand
Strand 2
A
1218 1221anti-parallel
Strand 3
A
1224 1227anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1581 1584first strand
Strand 2
A
1684 1687anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1772 1773first strand
Strand 2
A
1998 1999anti-parallel
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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1821 1823first strand
Strand 2
A
1839 1843anti-parallel
Strand 3
A
1846 1853anti-parallel
Strand 4
A
1856 1863anti-parallel
Strand 5
A
1943 1951parallel
Strand 6
A
1902 1907anti-parallel
Strand 7
A
1915 1920anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1977 1980first strand
Strand 2
A
1983 1985anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2004 2005first strand
Strand 2
A
2008 2009anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2058 2062first strand
Strand 2
A
2074 2078anti-parallel
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