Analysis of interatomic Contacts of Structural Units in PDB entry:
9VS4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VS4 entry

There is 1 chain in PDB entry 9VS4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 187HIS 1715
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 9VS4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
198 202Right-handed 310
Helix 2
AA2
A
204 213Right-handed alpha
Helix 3
AA3
A
215 227Right-handed alpha
Helix 4
AA4
A
237 247Right-handed alpha
Helix 5
AA5
A
247 261Right-handed alpha
Helix 6
AA6
A
262 264Right-handed 310
Helix 7
AA7
A
273 292Right-handed alpha
Helix 8
AA8
A
297 301Right-handed 310
Helix 9
AA9
A
319 333Right-handed alpha
Helix 10
AB1
A
340 351Right-handed alpha
Helix 11
AB2
A
356 370Right-handed alpha
Helix 12
AB3
A
402 406Right-handed 310
Helix 13
AB4
A
409 418Right-handed alpha
Helix 14
AB5
A
447 465Right-handed alpha
Helix 15
AB6
A
481 489Right-handed alpha
Helix 16
AB7
A
489 502Right-handed alpha
Helix 17
AB8
A
502 522Right-handed alpha
Helix 18
AB9
A
567 571Right-handed 310
Helix 19
AC1
A
598 607Right-handed alpha
Helix 20
AC2
A
607 621Right-handed alpha
Helix 21
AC3
A
627 640Right-handed alpha
Helix 22
AC4
A
646 662Right-handed alpha
Helix 23
AC5
A
666 674Right-handed alpha
Helix 24
AC6
A
681 701Right-handed alpha
Helix 25
AC7
A
701 706Right-handed alpha
Helix 26
AC8
A
738 753Right-handed alpha
Helix 27
AC9
A
765 782Right-handed alpha
Helix 28
AD1
A
796 815Right-handed alpha
Helix 29
AD2
A
817 826Right-handed alpha
Helix 30
AD3
A
895 901Right-handed alpha
Helix 31
AD4
A
912 922Right-handed alpha
Helix 32
AD5
A
929 941Right-handed alpha
Helix 33
AD6
A
965 984Right-handed alpha
Helix 34
AD7
A
996 1024Right-handed alpha
Helix 35
AD8
A
1048 1056Right-handed alpha
Helix 36
AD9
A
1061 1076Right-handed alpha
Helix 37
AE1
A
1083 1090Right-handed alpha
Helix 38
AE2
A
1101 1106Right-handed alpha
Helix 39
AE3
A
1125 1150Right-handed alpha
Helix 40
AE4
A
1178 1197Right-handed alpha
Helix 41
AE5
A
1229 1234Right-handed alpha
Helix 42
AE6
A
1244 1262Right-handed alpha
Helix 43
AE7
A
1265 1283Right-handed alpha
Helix 44
AE8
A
1317 1324Right-handed alpha
Helix 45
AE9
A
1327 1342Right-handed alpha
Helix 46
AF1
A
1343 1347Right-handed 310
Helix 47
AF2
A
1350 1356Right-handed alpha
Helix 48
AF3
A
1366 1379Right-handed alpha
Helix 49
AF4
A
1410 1416Right-handed alpha
Helix 50
AF5
A
1417 1429Right-handed alpha
Helix 51
AF6
A
1431 1442Right-handed alpha
Helix 52
AF7
A
1452 1463Right-handed alpha
Helix 53
AF8
A
1466 1474Right-handed alpha
Helix 54
AF9
A
1477 1488Right-handed alpha
Helix 55
AG1
A
1523 1538Right-handed alpha
Helix 56
AG2
A
1541 1553Right-handed alpha
Helix 57
AG3
A
1556 1569Right-handed alpha
Helix 58
AG4
A
1598 1608Right-handed alpha
Helix 59
AG5
A
1616 1635Right-handed alpha
Helix 60
AG6
A
1635 1646Right-handed alpha
Helix 61
AG7
A
1653 1675Right-handed alpha
Helix 62
AG8
A
1693 1705Right-handed alpha
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There are 11 sheets in PDB entry 9VS4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
441 443parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 388first strand
Strand 2
A
391 393anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 533first strand
Strand 2
A
540 545anti-parallel
Strand 3
A
557 565anti-parallel
Strand 4
A
588 592anti-parallel
Strand 5
A
577 582anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 533first strand
Strand 2
A
540 545anti-parallel
Strand 3
A
557 565anti-parallel
Strand 4
A
595 597anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
664 665first strand
Strand 2
A
1207 1209anti-parallel
Strand 3
A
1029 1037anti-parallel
Strand 4
A
1165 1173anti-parallel
Strand 5
A
1157 1162anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
728 729first strand
Strand 2
A
736 737anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
843 846first strand
Strand 2
A
908 911anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
963 964first strand
Strand 2
A
945 947anti-parallel
Strand 3
A
1078 1081parallel
Strand 4
A
1113 1116anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1212 1215first strand
Strand 2
A
1218 1221anti-parallel
Strand 3
A
1224 1227anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1571 1576first strand
Strand 2
A
1710 1714anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1581 1584first strand
Strand 2
A
1684 1687anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il