Analysis of interatomic Contacts of Structural Units in PDB entry:
9VS5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VS5 entry

There are 3 chains in PDB entry 9VS5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 2215
P
 U 4 U 13
T
 U 8 A 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 92 helices in PDB entry 9VS5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 14Right-handed alpha
Helix 2
AA2
A
18 45Right-handed alpha
Helix 3
AA3
A
54 63Right-handed alpha
Helix 4
AA4
A
67 71Right-handed 310
Helix 5
AA5
A
102 113Right-handed alpha
Helix 6
AA6
A
114 120Right-handed alpha
Helix 7
AA7
A
142 149Right-handed alpha
Helix 8
AA8
A
158 170Right-handed alpha
Helix 9
AA9
A
171 173Right-handed 310
Helix 10
AB1
A
175 183Right-handed alpha
Helix 11
AB2
A
198 202Right-handed 310
Helix 12
AB3
A
204 212Right-handed alpha
Helix 13
AB4
A
215 227Right-handed alpha
Helix 14
AB5
A
237 260Right-handed alpha
Helix 15
AB6
A
261 263Right-handed 310
Helix 16
AB7
A
273 292Right-handed alpha
Helix 17
AB8
A
297 301Right-handed 310
Helix 18
AB9
A
319 332Right-handed alpha
Helix 19
AC1
A
340 351Right-handed alpha
Helix 20
AC2
A
360 367Right-handed alpha
Helix 21
AC3
A
447 466Right-handed alpha
Helix 22
AC4
A
475 480Right-handed alpha
Helix 23
AC5
A
482 489Right-handed alpha
Helix 24
AC6
A
489 501Right-handed alpha
Helix 25
AC7
A
502 523Right-handed alpha
Helix 26
AC8
A
602 607Right-handed alpha
Helix 27
AC9
A
607 620Right-handed alpha
Helix 28
AD1
A
627 639Right-handed alpha
Helix 29
AD2
A
643 651Right-handed alpha
Helix 30
AD3
A
653 662Right-handed alpha
Helix 31
AD4
A
666 675Right-handed alpha
Helix 32
AD5
A
681 697Right-handed alpha
Helix 33
AD6
A
697 702Right-handed alpha
Helix 34
AD7
A
703 705Right-handed 310
Helix 35
AD8
A
738 753Right-handed alpha
Helix 36
AD9
A
759 781Right-handed alpha
Helix 37
AE1
A
796 813Right-handed alpha
Helix 38
AE2
A
818 825Right-handed alpha
Helix 39
AE3
A
831 835Right-handed 310
Helix 40
AE4
A
895 901Right-handed alpha
Helix 41
AE5
A
911 922Right-handed alpha
Helix 42
AE6
A
929 941Right-handed alpha
Helix 43
AE7
A
965 986Right-handed alpha
Helix 44
AE8
A
996 1023Right-handed alpha
Helix 45
AE9
A
1047 1053Right-handed 310
Helix 46
AF1
A
1061 1076Right-handed alpha
Helix 47
AF2
A
1083 1093Right-handed alpha
Helix 48
AF3
A
1100 1106Right-handed alpha
Helix 49
AF4
A
1107 1110Right-handed 310
Helix 50
AF5
A
1126 1151Right-handed alpha
Helix 51
AF6
A
1179 1197Right-handed alpha
Helix 52
AF7
A
1228 1237Right-handed 310
Helix 53
AF8
A
1249 1262Right-handed alpha
Helix 54
AF9
A
1265 1284Right-handed alpha
Helix 55
AG1
A
1317 1324Right-handed alpha
Helix 56
AG2
A
1327 1342Right-handed alpha
Helix 57
AG3
A
1350 1357Right-handed alpha
Helix 58
AG4
A
1361 1365Right-handed 310
Helix 59
AG5
A
1366 1379Right-handed alpha
Helix 60
AG6
A
1412 1416Right-handed 310
Helix 61
AG7
A
1417 1425Right-handed alpha
Helix 62
AG8
A
1430 1442Right-handed alpha
Helix 63
AG9
A
1443 1447Right-handed 310
Helix 64
AH1
A
1452 1464Right-handed alpha
Helix 65
AH2
A
1466 1473Right-handed alpha
Helix 66
AH3
A
1477 1488Right-handed alpha
Helix 67
AH4
A
1523 1536Right-handed alpha
Helix 68
AH5
A
1543 1553Right-handed alpha
Helix 69
AH6
A
1556 1569Right-handed alpha
Helix 70
AH7
A
1597 1608Right-handed alpha
Helix 71
AH8
A
1616 1635Right-handed alpha
Helix 72
AH9
A
1636 1645Right-handed alpha
Helix 73
AI1
A
1654 1677Right-handed alpha
Helix 74
AI2
A
1693 1705Right-handed alpha
Helix 75
AI3
A
1739 1753Right-handed alpha
Helix 76
AI4
A
1761 1771Right-handed alpha
Helix 77
AI5
A
1778 1787Right-handed alpha
Helix 78
AI6
A
1794 1801Right-handed alpha
Helix 79
AI7
A
1805 1815Right-handed alpha
Helix 80
AI8
A
1816 1818Right-handed 310
Helix 81
AI9
A
1868 1880Right-handed alpha
Helix 82
AJ1
A
1887 1891Right-handed 310
Helix 83
AJ2
A
1921 1927Right-handed alpha
Helix 84
AJ3
A
1960 1968Right-handed alpha
Helix 85
AJ4
A
1991 1995Right-handed 310
Helix 86
AJ5
A
2024 2029Right-handed alpha
Helix 87
AJ6
A
2034 2038Right-handed 310
Helix 88
AJ7
A
2084 2103Right-handed alpha
Helix 89
AJ8
A
2117 2130Right-handed alpha
Helix 90
AJ9
A
2145 2149Right-handed 310
Helix 91
AK1
A
2180 2185Right-handed alpha
Helix 92
AK2
A
2198 2215Right-handed alpha
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There are 17 sheets in PDB entry 9VS5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
90 91anti-parallel
Strand 3
A
126 127parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
441 443parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 388first strand
Strand 2
A
391 395anti-parallel
Strand 3
A
398 400anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 533first strand
Strand 2
A
540 545anti-parallel
Strand 3
A
557 565anti-parallel
Strand 4
A
588 592anti-parallel
Strand 5
A
577 582anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 533first strand
Strand 2
A
540 545anti-parallel
Strand 3
A
557 565anti-parallel
Strand 4
A
595 597anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
664 665first strand
Strand 2
A
1207 1209anti-parallel
Strand 3
A
1028 1036anti-parallel
Strand 4
A
1166 1174anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
711 712first strand
Strand 2
A
717 719anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
728 729first strand
Strand 2
A
736 737anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
846 848first strand
Strand 2
A
906 908anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
960 964first strand
Strand 2
A
945 950anti-parallel
Strand 3
A
1079 1081parallel
Strand 4
A
1113 1115anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1219 1221first strand
Strand 2
A
1224 1226anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1574 1575first strand
Strand 2
A
1711 1712anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1581 1583first strand
Strand 2
A
1685 1687anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1776 1777first strand
Strand 2
A
1772 1773anti-parallel
Strand 3
A
1998 1999anti-parallel
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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1820 1822first strand
Strand 2
A
1839 1843anti-parallel
Strand 3
A
1846 1853anti-parallel
Strand 4
A
1856 1863anti-parallel
Strand 5
A
1943 1950parallel
Strand 6
A
1902 1908anti-parallel
Strand 7
A
1914 1920anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1976 1977first strand
Strand 2
A
1985 1986anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2058 2062first strand
Strand 2
A
2074 2078anti-parallel
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