Analysis of interatomic Contacts of Structural Units in PDB entry:
9VS6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VS6 entry

There are 2 chains in PDB entry 9VS6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8PRO 366
B
 SER 8PRO 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 9VS6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 25Right-handed alpha
Helix 2
AA2
A
26 39Right-handed alpha
Helix 3
AA3
A
40 49Right-handed alpha
Helix 4
AA4
A
54 61Right-handed alpha
Helix 5
AA5
A
64 66Right-handed 310
Helix 6
AA6
A
67 81Right-handed alpha
Helix 7
AA7
A
107 112Right-handed alpha
Helix 8
AA8
A
121 129Right-handed alpha
Helix 9
AA9
A
130 135Right-handed alpha
Helix 10
AB1
A
136 138Right-handed 310
Helix 11
AB2
A
139 146Right-handed alpha
Helix 12
AB3
A
151 158Right-handed alpha
Helix 13
AB4
A
160 166Right-handed alpha
Helix 14
AB5
A
167 169Right-handed 310
Helix 15
AB6
A
170 195Right-handed alpha
Helix 16
AB7
A
196 200Right-handed 310
Helix 17
AB8
A
213 223Right-handed alpha
Helix 18
AB9
A
233 238Right-handed alpha
Helix 19
AC1
A
275 288Right-handed alpha
Helix 20
AC2
A
310 329Right-handed alpha
Helix 21
AC3
A
335 344Right-handed alpha
Helix 22
AC4
B
9 16Right-handed alpha
Helix 23
AC5
B
16 25Right-handed alpha
Helix 24
AC6
B
25 40Right-handed alpha
Helix 25
AC7
B
40 49Right-handed alpha
Helix 26
AC8
B
54 62Right-handed alpha
Helix 27
AC9
B
64 66Right-handed 310
Helix 28
AD1
B
67 81Right-handed alpha
Helix 29
AD2
B
107 112Right-handed alpha
Helix 30
AD3
B
121 129Right-handed alpha
Helix 31
AD4
B
130 135Right-handed alpha
Helix 32
AD5
B
136 138Right-handed 310
Helix 33
AD6
B
139 145Right-handed alpha
Helix 34
AD7
B
151 158Right-handed alpha
Helix 35
AD8
B
160 166Right-handed alpha
Helix 36
AD9
B
167 169Right-handed 310
Helix 37
AE1
B
170 195Right-handed alpha
Helix 38
AE2
B
196 199Right-handed 310
Helix 39
AE3
B
213 223Right-handed alpha
Helix 40
AE4
B
273 289Right-handed alpha
Helix 41
AE5
B
310 329Right-handed alpha
Helix 42
AE6
B
335 344Right-handed alpha
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There are 6 sheets in PDB entry 9VS6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
101 106anti-parallel
Strand 3
A
84 89anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 250first strand
Strand 2
A
227 232parallel
Strand 3
A
204 208parallel
Strand 4
A
262 266parallel
Strand 5
A
296 301parallel
Strand 6
A
359 365anti-parallel
Strand 7
A
349 355anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 304first strand
Strand 2
A
333 334parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
101 106anti-parallel
Strand 3
B
84 89anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 230first strand
Strand 2
B
204 208parallel
Strand 3
B
262 266parallel
Strand 4
B
296 301parallel
Strand 5
B
359 365anti-parallel
Strand 6
B
349 355anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 304first strand
Strand 2
B
333 334parallel
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