Analysis of interatomic Contacts of Structural Units in PDB entry:
9VSD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VSD entry

There are 3 chains in PDB entry 9VSD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 58PRO 436
B
 GLY 58PRO 436
C
 GLY 58PRO 436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 9VSD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 70Right-handed alpha
Helix 2
AA2
A
75 80Right-handed 310
Helix 3
AA3
A
81 92Right-handed alpha
Helix 4
AA4
A
94 102Right-handed alpha
Helix 5
AA5
A
114 119Right-handed alpha
Helix 6
AA6
A
125 137Right-handed alpha
Helix 7
AA7
A
140 148Right-handed alpha
Helix 8
AA8
A
149 152Right-handed 310
Helix 9
AA9
A
153 171Right-handed alpha
Helix 10
AB1
A
171 182Right-handed alpha
Helix 11
AB2
A
193 196Right-handed 310
Helix 12
AB3
A
197 217Right-handed alpha
Helix 13
AB4
A
218 223Right-handed 310
Helix 14
AB5
A
225 230Right-handed alpha
Helix 15
AB6
A
231 236Right-handed alpha
Helix 16
AB7
A
236 257Right-handed alpha
Helix 17
AB8
A
284 289Right-handed alpha
Helix 18
AB9
A
290 292Right-handed 310
Helix 19
AC1
A
293 302Right-handed alpha
Helix 20
AC2
A
303 308Right-handed alpha
Helix 21
AC3
A
311 316Right-handed alpha
Helix 22
AC4
A
320 325Right-handed alpha
Helix 23
AC5
A
328 332Right-handed 310
Helix 24
AC6
A
341 346Right-handed alpha
Helix 25
AC7
A
356 367Right-handed alpha
Helix 26
AC8
A
368 380Right-handed alpha
Helix 27
AC9
A
388 406Right-handed alpha
Helix 28
AD1
A
413 433Right-handed alpha
Helix 29
AD2
B
62 70Right-handed alpha
Helix 30
AD3
B
75 80Right-handed 310
Helix 31
AD4
B
81 92Right-handed alpha
Helix 32
AD5
B
94 102Right-handed alpha
Helix 33
AD6
B
114 119Right-handed alpha
Helix 34
AD7
B
125 137Right-handed alpha
Helix 35
AD8
B
140 148Right-handed alpha
Helix 36
AD9
B
149 152Right-handed 310
Helix 37
AE1
B
153 171Right-handed alpha
Helix 38
AE2
B
171 182Right-handed alpha
Helix 39
AE3
B
193 196Right-handed 310
Helix 40
AE4
B
197 217Right-handed alpha
Helix 41
AE5
B
218 223Right-handed 310
Helix 42
AE6
B
225 230Right-handed alpha
Helix 43
AE7
B
231 236Right-handed alpha
Helix 44
AE8
B
236 257Right-handed alpha
Helix 45
AE9
B
284 289Right-handed alpha
Helix 46
AF1
B
290 292Right-handed 310
Helix 47
AF2
B
293 302Right-handed alpha
Helix 48
AF3
B
303 308Right-handed alpha
Helix 49
AF4
B
311 316Right-handed alpha
Helix 50
AF5
B
320 325Right-handed alpha
Helix 51
AF6
B
328 332Right-handed 310
Helix 52
AF7
B
341 346Right-handed alpha
Helix 53
AF8
B
356 367Right-handed alpha
Helix 54
AF9
B
368 380Right-handed alpha
Helix 55
AG1
B
388 406Right-handed alpha
Helix 56
AG2
B
413 433Right-handed alpha
Helix 57
AG3
C
62 70Right-handed alpha
Helix 58
AG4
C
75 80Right-handed 310
Helix 59
AG5
C
81 92Right-handed alpha
Helix 60
AG6
C
94 102Right-handed alpha
Helix 61
AG7
C
114 119Right-handed alpha
Helix 62
AG8
C
125 137Right-handed alpha
Helix 63
AG9
C
140 148Right-handed alpha
Helix 64
AH1
C
149 152Right-handed 310
Helix 65
AH2
C
153 171Right-handed alpha
Helix 66
AH3
C
171 182Right-handed alpha
Helix 67
AH4
C
193 196Right-handed 310
Helix 68
AH5
C
197 217Right-handed alpha
Helix 69
AH6
C
218 223Right-handed 310
Helix 70
AH7
C
225 230Right-handed alpha
Helix 71
AH8
C
231 236Right-handed alpha
Helix 72
AH9
C
236 257Right-handed alpha
Helix 73
AI1
C
284 289Right-handed alpha
Helix 74
AI2
C
290 292Right-handed 310
Helix 75
AI3
C
293 302Right-handed alpha
Helix 76
AI4
C
303 308Right-handed alpha
Helix 77
AI5
C
311 316Right-handed alpha
Helix 78
AI6
C
320 325Right-handed alpha
Helix 79
AI7
C
328 332Right-handed 310
Helix 80
AI8
C
341 346Right-handed alpha
Helix 81
AI9
C
356 367Right-handed alpha
Helix 82
AJ1
C
368 380Right-handed alpha
Helix 83
AJ2
C
388 406Right-handed alpha
Helix 84
AJ3
C
413 433Right-handed alpha
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There are no sheets in PDB entry 9VSD
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