Analysis of interatomic Contacts of Structural Units in PDB entry:
9VSJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VSJ entry

There are 2 chains in PDB entry 9VSJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 8PHE 65
A
 MET 69TYR 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 9VSJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 62Right-handed 310
Helix 2
AA2
A
69 73Right-handed 310
Helix 3
AA3
A
81 86Right-handed alpha
Helix 4
AA4
A
133 138Right-handed alpha
Helix 5
AA5
A
146 158Right-handed alpha
Helix 6
AA6
A
166 177Right-handed alpha
Helix 7
AA7
A
185 194Right-handed alpha
Helix 8
AA8
A
202 217Right-handed alpha
Helix 9
AA9
A
303 307Right-handed 310
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There is 1 sheet (AA1) in PDB entry 9VSJ.

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 23first strand
Strand 2
A
26 37anti-parallel
Strand 3
A
42 49anti-parallel
Strand 4
A
290 300anti-parallel
Strand 5
A
272 281anti-parallel
Strand 6
A
221 228anti-parallel
Strand 7
A
231 241anti-parallel
Strand 8
A
249 260anti-parallel
Strand 9
A
91 99anti-parallel
Strand 10
A
104 114anti-parallel
Strand 11
A
117 127anti-parallel
Strand 12
A
13 23parallel
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