Analysis of interatomic Contacts of Structural Units in PDB entry:
9VSL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VSL entry

There are 3 chains in PDB entry 9VSL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 19THR 408
A
 LYS 410ARG 1091
C
 ARG 27TYR 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 9VSL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 64Right-handed alpha
Helix 2
AA2
A
66 82Right-handed alpha
Helix 3
AA3
A
87 91Right-handed 310
Helix 4
AA4
A
92 122Right-handed alpha
Helix 5
AA5
A
166 168Right-handed 310
Helix 6
AA6
A
190 194Right-handed 310
Helix 7
AA7
A
270 274Right-handed 310
Helix 8
AA8
A
282 314Right-handed alpha
Helix 9
AA9
A
328 334Right-handed alpha
Helix 10
AB1
A
335 351Right-handed alpha
Helix 11
AB2
A
352 355Right-handed 310
Helix 12
AB3
A
357 371Right-handed alpha
Helix 13
AB4
A
371 376Right-handed alpha
Helix 14
AB5
A
397 402Right-handed 310
Helix 15
AB6
A
657 666Right-handed alpha
Helix 16
AB7
A
677 688Right-handed alpha
Helix 17
AB8
A
709 716Right-handed alpha
Helix 18
AB9
A
716 721Right-handed alpha
Helix 19
AC1
A
753 762Right-handed alpha
Helix 20
AC2
A
763 765Right-handed 310
Helix 21
AC3
A
770 780Right-handed alpha
Helix 22
AC4
A
793 805Right-handed alpha
Helix 23
AC5
A
820 825Right-handed alpha
Helix 24
AC6
A
853 861Right-handed alpha
Helix 25
AC7
A
861 891Right-handed alpha
Helix 26
AC8
A
904 914Right-handed alpha
Helix 27
AC9
A
917 927Right-handed alpha
Helix 28
AD1
A
938 945Right-handed 310
Helix 29
AD2
A
948 951Right-handed 310
Helix 30
AD3
A
952 978Right-handed alpha
Helix 31
AD4
A
991 1014Right-handed alpha
Helix 32
AD5
A
1019 1041Right-handed alpha
Helix 33
AD6
A
1055 1061Right-handed alpha
Helix 34
AD7
A
1063 1078Right-handed alpha
Helix 35
AD8
A
1078 1089Right-handed alpha
Helix 36
AD9
C
46 49Right-handed 310
Helix 37
AE1
C
50 75Right-handed alpha
Helix 38
AE2
C
91 95Right-handed 310
Helix 39
AE3
C
131 136Right-handed alpha
Helix 40
AE4
C
141 145Right-handed 310
Helix 41
AE5
C
146 152Right-handed alpha
Helix 42
AE6
C
172 177Right-handed alpha
Helix 43
AE7
C
206 212Right-handed alpha
Helix 44
AE8
C
222 227Right-handed alpha
Helix 45
AE9
C
239 243Right-handed 310
Helix 46
AF1
C
246 250Right-handed 310
Helix 47
AF2
C
254 261Right-handed alpha
Helix 48
AF3
C
322 347Right-handed alpha
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There are 8 sheets in PDB entry 9VSL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
208 211anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 136first strand
Strand 2
A
125 128anti-parallel
Strand 3
A
146 148anti-parallel
Strand 4
A
257 263anti-parallel
Strand 5
A
158 164anti-parallel
Strand 6
A
244 245anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 188first strand
Strand 2
A
170 174anti-parallel
Strand 3
A
250 252anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
237 238anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 391first strand
Strand 2
A
847 849anti-parallel
Strand 3
A
829 833parallel
Strand 4
A
811 815parallel
Strand 5
A
405 408parallel
Strand 6
A
669 673parallel
Strand 7
A
784 788parallel
Strand 8
A
747 752parallel
Strand 9
A
696 700parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 81first strand
Strand 2
C
308 314anti-parallel
Strand 3
C
118 124anti-parallel
Strand 4
C
269 276anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
104 110first strand
Strand 2
C
289 296anti-parallel
Strand 3
C
182 188anti-parallel
Strand 4
C
194 196anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 163first strand
Strand 2
C
166 167anti-parallel
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