Analysis of interatomic Contacts of Structural Units in PDB entry:
9VSM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VSM entry

There are 4 chains in PDB entry 9VSM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 7	GLU 375
B	LYS 7	LEU 374
C	LYS 7	LEU 374
D	GLU 6	HIS 377

There are 54 helices in PDB entry 9VSM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	16	Right-handed alpha
Helix 2	AA2	A	59	71	Right-handed alpha
Helix 3	AA3	A	81	91	Right-handed alpha
Helix 4	AA4	A	106	121	Right-handed alpha
Helix 5	AA5	A	131	139	Right-handed alpha
Helix 6	AA6	A	160	171	Right-handed alpha
Helix 7	AA7	A	220	235	Right-handed alpha
Helix 8	AA8	A	239	251	Right-handed alpha
Helix 9	AA9	A	252	273	Right-handed alpha
Helix 10	AB1	A	298	306	Right-handed alpha
Helix 11	AB2	A	324	329	Right-handed alpha
Helix 12	AB3	A	334	341	Right-handed alpha
Helix 13	AB4	A	356	371	Right-handed alpha
Helix 14	AB5	B	9	16	Right-handed alpha
Helix 15	AB6	B	59	72	Right-handed alpha
Helix 16	AB7	B	81	91	Right-handed alpha
Helix 17	AB8	B	106	121	Right-handed alpha
Helix 18	AB9	B	131	139	Right-handed alpha
Helix 19	AC1	B	160	171	Right-handed alpha
Helix 20	AC2	B	188	193	Right-handed alpha
Helix 21	AC3	B	220	235	Right-handed alpha
Helix 22	AC4	B	239	251	Right-handed alpha
Helix 23	AC5	B	252	273	Right-handed alpha
Helix 24	AC6	B	298	306	Right-handed alpha
Helix 25	AC7	B	324	329	Right-handed alpha
Helix 26	AC8	B	334	341	Right-handed alpha
Helix 27	AC9	B	356	371	Right-handed alpha
Helix 28	AD1	C	9	16	Right-handed alpha
Helix 29	AD2	C	59	71	Right-handed alpha
Helix 30	AD3	C	81	91	Right-handed alpha
Helix 31	AD4	C	106	121	Right-handed alpha
Helix 32	AD5	C	131	139	Right-handed alpha
Helix 33	AD6	C	160	171	Right-handed alpha
Helix 34	AD7	C	188	193	Right-handed alpha
Helix 35	AD8	C	220	235	Right-handed alpha
Helix 36	AD9	C	239	251	Right-handed alpha
Helix 37	AE1	C	252	273	Right-handed alpha
Helix 38	AE2	C	298	306	Right-handed alpha
Helix 39	AE3	C	324	329	Right-handed alpha
Helix 40	AE4	C	334	341	Right-handed alpha
Helix 41	AE5	C	356	371	Right-handed alpha
Helix 42	AE6	D	9	16	Right-handed alpha
Helix 43	AE7	D	59	71	Right-handed alpha
Helix 44	AE8	D	81	91	Right-handed alpha
Helix 45	AE9	D	106	121	Right-handed alpha
Helix 46	AF1	D	131	139	Right-handed alpha
Helix 47	AF2	D	160	171	Right-handed alpha
Helix 48	AF3	D	220	235	Right-handed alpha
Helix 49	AF4	D	239	251	Right-handed alpha
Helix 50	AF5	D	252	274	Right-handed alpha
Helix 51	AF6	D	298	306	Right-handed alpha
Helix 52	AF7	D	324	329	Right-handed alpha
Helix 53	AF8	D	334	342	Right-handed alpha
Helix 54	AF9	D	356	371	Right-handed alpha

There are 8 sheets in PDB entry 9VSM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	79	first strand
Strand 2	A	214	218	anti-parallel
Strand 3	A	196	200	anti-parallel
Strand 4	A	174	178	parallel
Strand 5	A	143	149	parallel
Strand 6	A	98	102	parallel
Strand 7	A	123	127	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	281	first strand
Strand 2	A	288	293	anti-parallel
Strand 3	A	347	351	anti-parallel
Strand 4	A	321	323	anti-parallel
Strand 5	A	310	311	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	79	first strand
Strand 2	B	214	218	anti-parallel
Strand 3	B	196	200	anti-parallel
Strand 4	B	174	178	parallel
Strand 5	B	143	149	parallel
Strand 6	B	98	102	parallel
Strand 7	B	123	127	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	281	first strand
Strand 2	B	288	293	anti-parallel
Strand 3	B	347	351	anti-parallel
Strand 4	B	321	323	anti-parallel
Strand 5	B	310	311	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	79	first strand
Strand 2	C	214	218	anti-parallel
Strand 3	C	196	200	anti-parallel
Strand 4	C	174	178	parallel
Strand 5	C	143	149	parallel
Strand 6	C	98	102	parallel
Strand 7	C	123	127	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	281	first strand
Strand 2	C	288	293	anti-parallel
Strand 3	C	347	351	anti-parallel
Strand 4	C	321	323	anti-parallel
Strand 5	C	310	311	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	79	first strand
Strand 2	D	214	218	anti-parallel
Strand 3	D	196	200	anti-parallel
Strand 4	D	174	178	parallel
Strand 5	D	143	149	parallel
Strand 6	D	98	102	parallel
Strand 7	D	123	127	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	281	first strand
Strand 2	D	288	293	anti-parallel
Strand 3	D	347	351	anti-parallel
Strand 4	D	321	323	anti-parallel
Strand 5	D	310	311	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VSM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VSM