Analysis of interatomic Contacts of Structural Units in PDB entry:
9VSU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VSU entry

There is 1 chain in PDB entry 9VSU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 119PRO 1491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 9VSU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
192 201Right-handed alpha
Helix 2
AA2
A
221 228Right-handed alpha
Helix 3
AA3
A
247 258Right-handed alpha
Helix 4
AA4
A
270 285Right-handed alpha
Helix 5
AA5
A
287 291Right-handed 310
Helix 6
AA6
A
305 319Right-handed alpha
Helix 7
AA7
A
334 353Right-handed alpha
Helix 8
AA8
A
364 369Right-handed alpha
Helix 9
AA9
A
388 399Right-handed alpha
Helix 10
AB1
A
407 415Right-handed alpha
Helix 11
AB2
A
434 444Right-handed alpha
Helix 12
AB3
A
445 462Right-handed alpha
Helix 13
AB4
A
492 511Right-handed alpha
Helix 14
AB5
A
512 533Right-handed alpha
Helix 15
AB6
A
539 541Right-handed 310
Helix 16
AB7
A
542 560Right-handed alpha
Helix 17
AB8
A
561 563Right-handed 310
Helix 18
AB9
A
564 581Right-handed alpha
Helix 19
AC1
A
585 597Right-handed alpha
Helix 20
AC2
A
597 617Right-handed alpha
Helix 21
AC3
A
621 648Right-handed alpha
Helix 22
AC4
A
652 670Right-handed alpha
Helix 23
AC5
A
676 680Right-handed 310
Helix 24
AC6
A
681 683Right-handed 310
Helix 25
AC7
A
684 690Right-handed alpha
Helix 26
AC8
A
692 706Right-handed alpha
Helix 27
AC9
A
746 754Right-handed alpha
Helix 28
AD1
A
757 760Right-handed 310
Helix 29
AD2
A
761 784Right-handed alpha
Helix 30
AD3
A
900 909Right-handed alpha
Helix 31
AD4
A
932 936Right-handed alpha
Helix 32
AD5
A
951 964Right-handed alpha
Helix 33
AD6
A
969 984Right-handed alpha
Helix 34
AD7
A
1002 1016Right-handed alpha
Helix 35
AD8
A
1033 1050Right-handed alpha
Helix 36
AD9
A
1062 1067Right-handed alpha
Helix 37
AE1
A
1091 1101Right-handed alpha
Helix 38
AE2
A
1111 1120Right-handed alpha
Helix 39
AE3
A
1131 1138Right-handed alpha
Helix 40
AE4
A
1139 1156Right-handed alpha
Helix 41
AE5
A
1157 1159Right-handed 310
Helix 42
AE6
A
1164 1169Right-handed alpha
Helix 43
AE7
A
1174 1193Right-handed alpha
Helix 44
AE8
A
1196 1215Right-handed alpha
Helix 45
AE9
A
1221 1234Right-handed alpha
Helix 46
AF1
A
1235 1237Right-handed 310
Helix 47
AF2
A
1238 1260Right-handed alpha
Helix 48
AF3
A
1268 1296Right-handed alpha
Helix 49
AF4
A
1300 1304Right-handed 310
Helix 50
AF5
A
1305 1309Right-handed 310
Helix 51
AF6
A
1310 1339Right-handed alpha
Helix 52
AF7
A
1342 1360Right-handed alpha
Helix 53
AF8
A
1371 1373Right-handed 310
Helix 54
AF9
A
1374 1380Right-handed alpha
Helix 55
AG1
A
1381 1396Right-handed alpha
Helix 56
AG2
A
1403 1407Right-handed 310
Helix 57
AG3
A
1417 1421Right-handed 310
Helix 58
AG4
A
1422 1430Right-handed alpha
Helix 59
AG5
A
1448 1456Right-handed alpha
Helix 60
AG6
A
1459 1461Right-handed 310
Helix 61
AG7
A
1462 1490Right-handed alpha
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There are 7 sheets in PDB entry 9VSU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
123 126anti-parallel
Strand 3
A
214 216anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
208 209anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 236first strand
Strand 2
A
323 327parallel
Strand 3
A
355 359parallel
Strand 4
A
183 186parallel
Strand 5
A
373 377parallel
Strand 6
A
382 387anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
709 711first strand
Strand 2
A
743 745anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
875 885first strand
Strand 2
A
859 868anti-parallel
Strand 3
A
915 924anti-parallel
Strand 4
A
927 928anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
937 940first strand
Strand 2
A
1022 1026parallel
Strand 3
A
1054 1058parallel
Strand 4
A
890 894parallel
Strand 5
A
1071 1076parallel
Strand 6
A
1080 1086anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1408 1410first strand
Strand 2
A
1441 1444anti-parallel
Strand 3
A
1432 1435anti-parallel
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