Analysis of interatomic Contacts of Structural Units in PDB entry:
9VSW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VSW entry

There is 1 chain in PDB entry 9VSW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 119PRO 1491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 9VSW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
196 201Right-handed alpha
Helix 2
AA2
A
221 229Right-handed alpha
Helix 3
AA3
A
247 258Right-handed alpha
Helix 4
AA4
A
273 284Right-handed alpha
Helix 5
AA5
A
308 319Right-handed alpha
Helix 6
AA6
A
334 352Right-handed alpha
Helix 7
AA7
A
364 369Right-handed alpha
Helix 8
AA8
A
391 399Right-handed alpha
Helix 9
AA9
A
407 415Right-handed alpha
Helix 10
AB1
A
435 444Right-handed alpha
Helix 11
AB2
A
448 466Right-handed alpha
Helix 12
AB3
A
492 511Right-handed alpha
Helix 13
AB4
A
512 533Right-handed alpha
Helix 14
AB5
A
539 541Right-handed 310
Helix 15
AB6
A
542 559Right-handed alpha
Helix 16
AB7
A
562 564Right-handed 310
Helix 17
AB8
A
565 570Right-handed alpha
Helix 18
AB9
A
571 581Right-handed alpha
Helix 19
AC1
A
585 597Right-handed alpha
Helix 20
AC2
A
597 604Right-handed alpha
Helix 21
AC3
A
604 614Right-handed alpha
Helix 22
AC4
A
621 647Right-handed alpha
Helix 23
AC5
A
652 661Right-handed alpha
Helix 24
AC6
A
662 670Right-handed alpha
Helix 25
AC7
A
676 680Right-handed 310
Helix 26
AC8
A
684 690Right-handed alpha
Helix 27
AC9
A
692 706Right-handed alpha
Helix 28
AD1
A
746 753Right-handed alpha
Helix 29
AD2
A
757 761Right-handed 310
Helix 30
AD3
A
762 783Right-handed alpha
Helix 31
AD4
A
900 909Right-handed alpha
Helix 32
AD5
A
951 962Right-handed alpha
Helix 33
AD6
A
969 982Right-handed alpha
Helix 34
AD7
A
1002 1016Right-handed alpha
Helix 35
AD8
A
1036 1049Right-handed alpha
Helix 36
AD9
A
1062 1067Right-handed alpha
Helix 37
AE1
A
1088 1090Right-handed 310
Helix 38
AE2
A
1091 1101Right-handed alpha
Helix 39
AE3
A
1111 1120Right-handed alpha
Helix 40
AE4
A
1131 1137Right-handed alpha
Helix 41
AE5
A
1139 1153Right-handed alpha
Helix 42
AE6
A
1155 1159Right-handed 310
Helix 43
AE7
A
1174 1193Right-handed alpha
Helix 44
AE8
A
1195 1215Right-handed alpha
Helix 45
AE9
A
1221 1236Right-handed alpha
Helix 46
AF1
A
1238 1260Right-handed alpha
Helix 47
AF2
A
1268 1294Right-handed alpha
Helix 48
AF3
A
1295 1300Right-handed alpha
Helix 49
AF4
A
1310 1339Right-handed alpha
Helix 50
AF5
A
1346 1360Right-handed alpha
Helix 51
AF6
A
1371 1374Right-handed 310
Helix 52
AF7
A
1375 1380Right-handed alpha
Helix 53
AF8
A
1381 1395Right-handed alpha
Helix 54
AF9
A
1417 1421Right-handed 310
Helix 55
AG1
A
1422 1430Right-handed alpha
Helix 56
AG2
A
1448 1456Right-handed alpha
Helix 57
AG3
A
1462 1489Right-handed alpha
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There are 6 sheets in PDB entry 9VSW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
123 125anti-parallel
Strand 3
A
215 216anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 236first strand
Strand 2
A
323 327parallel
Strand 3
A
355 359parallel
Strand 4
A
183 187parallel
Strand 5
A
373 377parallel
Strand 6
A
382 387anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
709 711first strand
Strand 2
A
743 745anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
859 868first strand
Strand 2
A
875 885anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
937 940first strand
Strand 2
A
1022 1026parallel
Strand 3
A
1054 1057parallel
Strand 4
A
890 895parallel
Strand 5
A
1071 1075parallel
Strand 6
A
1081 1086anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1408 1410first strand
Strand 2
A
1441 1444anti-parallel
Strand 3
A
1432 1434anti-parallel
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