Analysis of interatomic Contacts of Structural Units in PDB entry:
9VSX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VSX entry

There are 4 chains in PDB entry 9VSX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 51THR 169
A
 HIS 171ALA 482
B
 GLY 51THR 169
B
 HIS 171ALA 482
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 9VSX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 65Right-handed 310
Helix 2
AA2
A
66 83Right-handed alpha
Helix 3
AA3
A
86 88Right-handed 310
Helix 4
AA4
A
128 132Right-handed 310
Helix 5
AA5
A
133 143Right-handed alpha
Helix 6
AA6
A
144 148Right-handed 310
Helix 7
AA7
A
187 201Right-handed alpha
Helix 8
AA8
A
214 219Right-handed 310
Helix 9
AA9
A
263 275Right-handed alpha
Helix 10
AB1
A
281 293Right-handed alpha
Helix 11
AB2
A
305 311Right-handed 310
Helix 12
AB3
A
312 317Right-handed alpha
Helix 13
AB4
A
319 323Right-handed 310
Helix 14
AB5
A
344 355Right-handed alpha
Helix 15
AB6
A
361 394Right-handed alpha
Helix 16
AB7
A
397 404Right-handed alpha
Helix 17
AB8
A
415 431Right-handed alpha
Helix 18
AB9
A
433 438Right-handed alpha
Helix 19
AC1
A
440 450Right-handed alpha
Helix 20
AC2
A
453 465Right-handed alpha
Helix 21
AC3
A
471 475Right-handed 310
Helix 22
AC4
B
63 65Right-handed 310
Helix 23
AC5
B
66 83Right-handed alpha
Helix 24
AC6
B
86 88Right-handed 310
Helix 25
AC7
B
128 132Right-handed 310
Helix 26
AC8
B
133 143Right-handed alpha
Helix 27
AC9
B
144 148Right-handed 310
Helix 28
AD1
B
187 201Right-handed alpha
Helix 29
AD2
B
214 219Right-handed 310
Helix 30
AD3
B
263 273Right-handed alpha
Helix 31
AD4
B
281 293Right-handed alpha
Helix 32
AD5
B
305 310Right-handed 310
Helix 33
AD6
B
311 317Right-handed alpha
Helix 34
AD7
B
319 323Right-handed 310
Helix 35
AD8
B
344 356Right-handed alpha
Helix 36
AD9
B
361 394Right-handed alpha
Helix 37
AE1
B
397 404Right-handed alpha
Helix 38
AE2
B
415 431Right-handed alpha
Helix 39
AE3
B
433 438Right-handed alpha
Helix 40
AE4
B
440 450Right-handed alpha
Helix 41
AE5
B
453 465Right-handed alpha
Helix 42
AE6
B
471 475Right-handed 310
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There are 6 sheets in PDB entry 9VSX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
53 59parallel
Strand 3
A
163 169parallel
Strand 4
A
205 211parallel
Strand 5
A
229 233parallel
Strand 6
A
300 303anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
176 177anti-parallel
Strand 3
A
185 186anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
242 244anti-parallel
Strand 3
A
339 341anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 93first strand
Strand 2
B
53 59parallel
Strand 3
B
163 169parallel
Strand 4
B
205 211parallel
Strand 5
B
229 233parallel
Strand 6
B
300 303anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 173first strand
Strand 2
B
176 177anti-parallel
Strand 3
B
185 186anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 262first strand
Strand 2
B
242 244anti-parallel
Strand 3
B
340 341anti-parallel
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