Analysis of interatomic Contacts of Structural Units in PDB entry:
9VSZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VSZ entry

There is 1 chain in PDB entry 9VSZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 119PRO 1491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 9VSZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
192 201Right-handed alpha
Helix 2
AA2
A
221 228Right-handed alpha
Helix 3
AA3
A
247 258Right-handed alpha
Helix 4
AA4
A
270 285Right-handed alpha
Helix 5
AA5
A
287 291Right-handed 310
Helix 6
AA6
A
307 319Right-handed alpha
Helix 7
AA7
A
334 352Right-handed alpha
Helix 8
AA8
A
364 369Right-handed alpha
Helix 9
AA9
A
389 399Right-handed alpha
Helix 10
AB1
A
407 415Right-handed alpha
Helix 11
AB2
A
434 444Right-handed alpha
Helix 12
AB3
A
445 465Right-handed alpha
Helix 13
AB4
A
472 477Right-handed alpha
Helix 14
AB5
A
492 511Right-handed alpha
Helix 15
AB6
A
512 533Right-handed alpha
Helix 16
AB7
A
539 541Right-handed 310
Helix 17
AB8
A
542 559Right-handed alpha
Helix 18
AB9
A
560 562Right-handed 310
Helix 19
AC1
A
563 581Right-handed alpha
Helix 20
AC2
A
585 596Right-handed alpha
Helix 21
AC3
A
597 616Right-handed alpha
Helix 22
AC4
A
621 648Right-handed alpha
Helix 23
AC5
A
652 670Right-handed alpha
Helix 24
AC6
A
676 680Right-handed 310
Helix 25
AC7
A
681 684Right-handed 310
Helix 26
AC8
A
685 690Right-handed alpha
Helix 27
AC9
A
691 705Right-handed alpha
Helix 28
AD1
A
726 730Right-handed 310
Helix 29
AD2
A
746 754Right-handed alpha
Helix 30
AD3
A
757 761Right-handed 310
Helix 31
AD4
A
762 784Right-handed alpha
Helix 32
AD5
A
900 909Right-handed alpha
Helix 33
AD6
A
932 936Right-handed alpha
Helix 34
AD7
A
951 964Right-handed alpha
Helix 35
AD8
A
969 984Right-handed alpha
Helix 36
AD9
A
1002 1016Right-handed alpha
Helix 37
AE1
A
1033 1049Right-handed alpha
Helix 38
AE2
A
1062 1067Right-handed alpha
Helix 39
AE3
A
1091 1101Right-handed alpha
Helix 40
AE4
A
1111 1121Right-handed alpha
Helix 41
AE5
A
1139 1156Right-handed alpha
Helix 42
AE6
A
1164 1168Right-handed 310
Helix 43
AE7
A
1174 1193Right-handed alpha
Helix 44
AE8
A
1193 1215Right-handed alpha
Helix 45
AE9
A
1221 1235Right-handed alpha
Helix 46
AF1
A
1238 1258Right-handed alpha
Helix 47
AF2
A
1268 1300Right-handed alpha
Helix 48
AF3
A
1301 1305Right-handed 310
Helix 49
AF4
A
1310 1339Right-handed alpha
Helix 50
AF5
A
1342 1360Right-handed alpha
Helix 51
AF6
A
1374 1380Right-handed alpha
Helix 52
AF7
A
1381 1393Right-handed alpha
Helix 53
AF8
A
1417 1422Right-handed alpha
Helix 54
AF9
A
1422 1430Right-handed alpha
Helix 55
AG1
A
1448 1456Right-handed alpha
Helix 56
AG2
A
1462 1490Right-handed alpha
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There are 6 sheets in PDB entry 9VSZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
123 125anti-parallel
Strand 3
A
215 216anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 236first strand
Strand 2
A
323 326parallel
Strand 3
A
355 359parallel
Strand 4
A
183 187parallel
Strand 5
A
373 377parallel
Strand 6
A
382 387anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
709 711first strand
Strand 2
A
743 745anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
874 885first strand
Strand 2
A
859 869anti-parallel
Strand 3
A
916 924anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
937 940first strand
Strand 2
A
1022 1026parallel
Strand 3
A
1054 1057parallel
Strand 4
A
890 895parallel
Strand 5
A
1071 1075parallel
Strand 6
A
1081 1086anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1408 1410first strand
Strand 2
A
1441 1444anti-parallel
Strand 3
A
1432 1434anti-parallel
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