Analysis of interatomic Contacts of Structural Units in PDB entry:
9VT1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VT1 entry

There is 1 chain in PDB entry 9VT1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 32ASN 1494
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 9VT1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 51Right-handed alpha
Helix 2
AA2
A
145 159Right-handed alpha
Helix 3
AA3
A
192 201Right-handed alpha
Helix 4
AA4
A
221 229Right-handed alpha
Helix 5
AA5
A
247 260Right-handed alpha
Helix 6
AA6
A
269 285Right-handed alpha
Helix 7
AA7
A
287 291Right-handed 310
Helix 8
AA8
A
304 320Right-handed alpha
Helix 9
AA9
A
334 352Right-handed alpha
Helix 10
AB1
A
364 369Right-handed alpha
Helix 11
AB2
A
390 399Right-handed alpha
Helix 12
AB3
A
407 415Right-handed alpha
Helix 13
AB4
A
434 444Right-handed alpha
Helix 14
AB5
A
445 462Right-handed alpha
Helix 15
AB6
A
492 511Right-handed alpha
Helix 16
AB7
A
512 533Right-handed alpha
Helix 17
AB8
A
539 541Right-handed 310
Helix 18
AB9
A
542 571Right-handed alpha
Helix 19
AC1
A
571 581Right-handed alpha
Helix 20
AC2
A
585 616Right-handed alpha
Helix 21
AC3
A
621 649Right-handed alpha
Helix 22
AC4
A
652 670Right-handed alpha
Helix 23
AC5
A
676 680Right-handed 310
Helix 24
AC6
A
681 689Right-handed alpha
Helix 25
AC7
A
691 706Right-handed alpha
Helix 26
AC8
A
719 723Right-handed 310
Helix 27
AC9
A
746 754Right-handed alpha
Helix 28
AD1
A
757 759Right-handed 310
Helix 29
AD2
A
760 786Right-handed alpha
Helix 30
AD3
A
800 804Right-handed alpha
Helix 31
AD4
A
900 909Right-handed alpha
Helix 32
AD5
A
932 936Right-handed alpha
Helix 33
AD6
A
951 964Right-handed alpha
Helix 34
AD7
A
969 984Right-handed alpha
Helix 35
AD8
A
1002 1017Right-handed alpha
Helix 36
AD9
A
1033 1050Right-handed alpha
Helix 37
AE1
A
1062 1067Right-handed alpha
Helix 38
AE2
A
1088 1090Right-handed 310
Helix 39
AE3
A
1091 1101Right-handed alpha
Helix 40
AE4
A
1111 1120Right-handed alpha
Helix 41
AE5
A
1131 1138Right-handed alpha
Helix 42
AE6
A
1139 1158Right-handed alpha
Helix 43
AE7
A
1164 1169Right-handed 310
Helix 44
AE8
A
1174 1192Right-handed alpha
Helix 45
AE9
A
1193 1215Right-handed alpha
Helix 46
AF1
A
1222 1236Right-handed alpha
Helix 47
AF2
A
1238 1260Right-handed alpha
Helix 48
AF3
A
1260 1265Right-handed alpha
Helix 49
AF4
A
1268 1297Right-handed alpha
Helix 50
AF5
A
1300 1305Right-handed 310
Helix 51
AF6
A
1314 1339Right-handed alpha
Helix 52
AF7
A
1342 1360Right-handed alpha
Helix 53
AF8
A
1371 1373Right-handed 310
Helix 54
AF9
A
1374 1381Right-handed alpha
Helix 55
AG1
A
1381 1396Right-handed alpha
Helix 56
AG2
A
1403 1407Right-handed 310
Helix 57
AG3
A
1417 1430Right-handed alpha
Helix 58
AG4
A
1448 1456Right-handed alpha
Helix 59
AG5
A
1462 1489Right-handed alpha
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There are 9 sheets in PDB entry 9VT1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 177first strand
Strand 2
A
123 133anti-parallel
Strand 3
A
208 209anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 177first strand
Strand 2
A
123 133anti-parallel
Strand 3
A
214 216anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
798 799parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 236first strand
Strand 2
A
323 327parallel
Strand 3
A
355 359parallel
Strand 4
A
183 186parallel
Strand 5
A
373 378parallel
Strand 6
A
381 387anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
422 423anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
709 711first strand
Strand 2
A
743 745anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
874 885first strand
Strand 2
A
859 869anti-parallel
Strand 3
A
916 924anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
937 940first strand
Strand 2
A
1022 1026parallel
Strand 3
A
1054 1057parallel
Strand 4
A
890 895parallel
Strand 5
A
1071 1076parallel
Strand 6
A
1080 1086anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1408 1410first strand
Strand 2
A
1441 1444anti-parallel
Strand 3
A
1432 1434anti-parallel
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