Analysis of interatomic Contacts of Structural Units in PDB entry:
9VT4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VT4 entry

There are 9 chains in PDB entry 9VT4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 32	PRO 187
B	ILE 504	GLY 598
G	GLN 1	GLN 123
C	SER 32	PRO 187
D	ILE 504	GLY 598
H	GLN 1	GLN 123
E	SER 32	PRO 187
F	ILE 504	GLY 598
I	GLN 1	GLN 123

There are 18 helices in PDB entry 9VT4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	71	74	Right-handed 310
Helix 2	AA2	A	78	85	Right-handed alpha
Helix 3	AA3	B	554	576	Right-handed alpha
Helix 4	AA4	B	583	597	Right-handed alpha
Helix 5	AA5	G	28	31	Right-handed 310
Helix 6	AA6	G	64	67	Right-handed 310
Helix 7	AA7	C	71	74	Right-handed 310
Helix 8	AA8	C	78	85	Right-handed alpha
Helix 9	AA9	D	554	576	Right-handed alpha
Helix 10	AB1	D	583	597	Right-handed alpha
Helix 11	AB2	H	28	31	Right-handed 310
Helix 12	AB3	H	64	67	Right-handed 310
Helix 13	AB4	E	71	74	Right-handed 310
Helix 14	AB5	E	78	85	Right-handed alpha
Helix 15	AB6	F	554	576	Right-handed alpha
Helix 16	AB7	F	583	597	Right-handed alpha
Helix 17	AB8	I	28	31	Right-handed 310
Helix 18	AB9	I	64	67	Right-handed 310

There are 18 sheets in PDB entry 9VT4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	37	first strand
Strand 2	A	175	185	parallel
Strand 3	A	108	110	anti-parallel
Strand 4	A	138	139	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	69	first strand
Strand 2	A	175	185	anti-parallel
Strand 3	A	159	161	anti-parallel
Strand 4	A	165	167	anti-parallel
Strand 5	A	96	98	anti-parallel
Strand 6	B	580	581	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	89	first strand
Strand 2	A	151	154	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	520	first strand
Strand 2	B	543	545	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	6	first strand
Strand 2	G	22	26	anti-parallel
Strand 3	G	80	82	anti-parallel
Strand 4	G	73	75	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	60	62	first strand
Strand 2	G	46	52	anti-parallel
Strand 3	G	33	38	anti-parallel
Strand 4	G	96	101	anti-parallel
Strand 5	G	117	118	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	37	first strand
Strand 2	C	175	185	parallel
Strand 3	C	108	110	anti-parallel
Strand 4	C	138	139	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	69	first strand
Strand 2	C	175	185	anti-parallel
Strand 3	C	159	161	anti-parallel
Strand 4	C	165	167	anti-parallel
Strand 5	C	96	98	anti-parallel
Strand 6	D	580	581	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	89	first strand
Strand 2	C	151	154	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	518	520	first strand
Strand 2	D	543	545	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	6	first strand
Strand 2	H	22	26	anti-parallel
Strand 3	H	80	82	anti-parallel
Strand 4	H	73	75	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	62	first strand
Strand 2	H	46	52	anti-parallel
Strand 3	H	33	38	anti-parallel
Strand 4	H	96	101	anti-parallel
Strand 5	H	117	118	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	37	first strand
Strand 2	E	175	185	parallel
Strand 3	E	108	110	anti-parallel
Strand 4	E	138	139	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	69	first strand
Strand 2	E	175	185	anti-parallel
Strand 3	E	159	161	anti-parallel
Strand 4	E	165	167	anti-parallel
Strand 5	E	96	98	anti-parallel
Strand 6	F	580	581	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	89	first strand
Strand 2	E	151	154	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	518	520	first strand
Strand 2	F	543	545	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	2	6	first strand
Strand 2	I	22	26	anti-parallel
Strand 3	I	80	82	anti-parallel
Strand 4	I	73	75	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	60	62	first strand
Strand 2	I	46	52	anti-parallel
Strand 3	I	33	38	anti-parallel
Strand 4	I	96	101	anti-parallel
Strand 5	I	117	118	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VT4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VT4