Analysis of interatomic Contacts of Structural Units in PDB entry:
9VT8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VT8 entry

There are 2 chains in PDB entry 9VT8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 12GLY 291
B
 HIS 1VAL 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9VT8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 25Right-handed alpha
Helix 2
AA2
A
32 43Right-handed alpha
Helix 3
AA3
A
72 87Right-handed alpha
Helix 4
AA4
A
98 103Right-handed alpha
Helix 5
AA5
A
124 127Right-handed 310
Helix 6
AA6
A
141 150Right-handed alpha
Helix 7
AA7
A
154 162Right-handed alpha
Helix 8
AA8
A
188 192Right-handed alpha
Helix 9
AA9
A
193 204Right-handed alpha
Helix 10
AB1
A
205 214Right-handed alpha
Helix 11
AB2
A
237 246Right-handed alpha
Helix 12
AB3
A
247 258Right-handed alpha
Helix 13
AB4
A
271 277Right-handed alpha
Helix 14
AB5
B
1 5Right-handed 310
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There is 1 sheet (AA1) in PDB entry 9VT8.

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 55first strand
Strand 2
A
59 69anti-parallel
Strand 3
A
112 120anti-parallel
Strand 4
A
129 136anti-parallel
Strand 5
A
165 173anti-parallel
Strand 6
A
178 187anti-parallel
Strand 7
A
217 221anti-parallel
Strand 8
A
230 234anti-parallel
Strand 9
A
264 270anti-parallel
Strand 10
A
281 287anti-parallel
Strand 11
A
47 55anti-parallel
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