Analysis of interatomic Contacts of Structural Units in PDB entry:
9VT9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VT9 entry

There are 2 chains in PDB entry 9VT9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 10SER 305
B
 ASN 10SER 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 9VT9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 28Right-handed alpha
Helix 2
AA2
A
34 43Right-handed alpha
Helix 3
AA3
A
76 93Right-handed alpha
Helix 4
AA4
A
101 112Right-handed alpha
Helix 5
AA5
A
129 132Right-handed 310
Helix 6
AA6
A
145 157Right-handed alpha
Helix 7
AA7
A
161 171Right-handed alpha
Helix 8
AA8
A
198 202Right-handed 310
Helix 9
AA9
A
205 214Right-handed alpha
Helix 10
AB1
A
217 225Right-handed alpha
Helix 11
AB2
A
249 256Right-handed 310
Helix 12
AB3
A
260 272Right-handed alpha
Helix 13
AB4
A
286 290Right-handed 310
Helix 14
AB5
B
11 28Right-handed alpha
Helix 15
AB6
B
34 45Right-handed alpha
Helix 16
AB7
B
76 93Right-handed alpha
Helix 17
AB8
B
101 112Right-handed alpha
Helix 18
AB9
B
129 132Right-handed 310
Helix 19
AC1
B
145 157Right-handed alpha
Helix 20
AC2
B
161 171Right-handed alpha
Helix 21
AC3
B
198 202Right-handed 310
Helix 22
AC4
B
205 213Right-handed alpha
Helix 23
AC5
B
217 227Right-handed alpha
Helix 24
AC6
B
249 251Right-handed 310
Helix 25
AC7
B
252 257Right-handed alpha
Helix 26
AC8
B
260 272Right-handed alpha
Helix 27
AC9
B
286 290Right-handed 310
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There are 2 sheets in PDB entry 9VT9. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
49 58anti-parallel
Strand 3
A
296 304anti-parallel
Strand 4
A
276 284anti-parallel
Strand 5
A
242 247anti-parallel
Strand 6
A
229 234anti-parallel
Strand 7
A
185 191anti-parallel
Strand 8
A
172 180anti-parallel
Strand 9
A
134 141anti-parallel
Strand 10
A
117 125anti-parallel
Strand 11
A
66 71anti-parallel
Strand 12
A
49 58anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
49 58anti-parallel
Strand 3
B
296 304anti-parallel
Strand 4
B
276 284anti-parallel
Strand 5
B
242 247anti-parallel
Strand 6
B
229 234anti-parallel
Strand 7
B
185 191anti-parallel
Strand 8
B
172 180anti-parallel
Strand 9
B
134 141anti-parallel
Strand 10
B
117 125anti-parallel
Strand 11
B
66 71anti-parallel
Strand 12
B
49 58anti-parallel
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