Analysis of interatomic Contacts of Structural Units in PDB entry:
9VTB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VTB entry

There are 2 chains in PDB entry 9VTB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 5TYR 283
B
 PRO 5TYR 283
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 9VTB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 23Right-handed alpha
Helix 2
AA2
A
28 40Right-handed alpha
Helix 3
AA3
A
70 88Right-handed alpha
Helix 4
AA4
A
94 100Right-handed alpha
Helix 5
AA5
A
101 105Right-handed 310
Helix 6
AA6
A
106 108Right-handed 310
Helix 7
AA7
A
122 125Right-handed 310
Helix 8
AA8
A
138 150Right-handed alpha
Helix 9
AA9
A
152 159Right-handed 310
Helix 10
AB1
A
185 190Right-handed alpha
Helix 11
AB2
A
191 202Right-handed alpha
Helix 12
AB3
A
203 211Right-handed alpha
Helix 13
AB4
A
235 244Right-handed alpha
Helix 14
AB5
A
245 255Right-handed alpha
Helix 15
AB6
A
268 274Right-handed alpha
Helix 16
AB7
B
7 24Right-handed alpha
Helix 17
AB8
B
28 40Right-handed alpha
Helix 18
AB9
B
70 88Right-handed alpha
Helix 19
AC1
B
94 100Right-handed alpha
Helix 20
AC2
B
101 105Right-handed 310
Helix 21
AC3
B
106 108Right-handed 310
Helix 22
AC4
B
122 125Right-handed 310
Helix 23
AC5
B
138 150Right-handed alpha
Helix 24
AC6
B
152 159Right-handed 310
Helix 25
AC7
B
186 190Right-handed alpha
Helix 26
AC8
B
191 200Right-handed alpha
Helix 27
AC9
B
203 211Right-handed alpha
Helix 28
AD1
B
235 244Right-handed alpha
Helix 29
AD2
B
245 255Right-handed alpha
Helix 30
AD3
B
268 273Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 9VTB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 181first strand
Strand 2
A
164 171anti-parallel
Strand 3
A
127 134anti-parallel
Strand 4
A
110 118anti-parallel
Strand 5
A
56 66anti-parallel
Strand 6
A
44 53anti-parallel
Strand 7
A
278 283anti-parallel
Strand 8
A
263 267anti-parallel
Strand 9
A
226 233anti-parallel
Strand 10
A
213 221anti-parallel
Strand 11
A
183 184anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 181first strand
Strand 2
B
164 171anti-parallel
Strand 3
B
127 134anti-parallel
Strand 4
B
110 118anti-parallel
Strand 5
B
56 66anti-parallel
Strand 6
B
44 53anti-parallel
Strand 7
B
278 283anti-parallel
Strand 8
B
263 267anti-parallel
Strand 9
B
226 233anti-parallel
Strand 10
B
213 221anti-parallel
Strand 11
B
183 185anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il