Analysis of interatomic Contacts of Structural Units in PDB entry:
9VTD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VTD entry

There is 1 chain in PDB entry 9VTD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8PHE 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9VTD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 21Right-handed alpha
Helix 2
AA2
A
28 43Right-handed alpha
Helix 3
AA3
A
72 88Right-handed alpha
Helix 4
AA4
A
96 104Right-handed alpha
Helix 5
AA5
A
108 110Right-handed 310
Helix 6
AA6
A
124 127Right-handed 310
Helix 7
AA7
A
139 150Right-handed alpha
Helix 8
AA8
A
154 159Right-handed alpha
Helix 9
AA9
A
189 191Right-handed 310
Helix 10
AB1
A
193 204Right-handed alpha
Helix 11
AB2
A
205 210Right-handed alpha
Helix 12
AB3
A
211 213Right-handed 310
Helix 13
AB4
A
237 239Right-handed 310
Helix 14
AB5
A
240 245Right-handed alpha
Helix 15
AB6
A
248 257Right-handed alpha
Helix 16
AB7
A
272 277Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9VTD.

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 183first strand
Strand 2
A
166 173anti-parallel
Strand 3
A
129 136anti-parallel
Strand 4
A
112 120anti-parallel
Strand 5
A
58 68anti-parallel
Strand 6
A
47 55anti-parallel
Strand 7
A
282 288anti-parallel
Strand 8
A
265 271anti-parallel
Strand 9
A
230 235anti-parallel
Strand 10
A
215 221anti-parallel
Strand 11
A
185 187anti-parallel
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