Analysis of interatomic Contacts of Structural Units in PDB entry:
9VTE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VTE entry

There are 2 chains in PDB entry 9VTE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 8ILE 289
B
 GLY 8ILE 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9VTE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 21Right-handed alpha
Helix 2
AA2
A
28 43Right-handed alpha
Helix 3
AA3
A
72 87Right-handed alpha
Helix 4
AA4
A
96 104Right-handed alpha
Helix 5
AA5
A
139 150Right-handed alpha
Helix 6
AA6
A
154 161Right-handed alpha
Helix 7
AA7
A
188 192Right-handed alpha
Helix 8
AA8
A
193 204Right-handed alpha
Helix 9
AA9
A
205 210Right-handed alpha
Helix 10
AB1
A
240 245Right-handed alpha
Helix 11
AB2
A
248 259Right-handed alpha
Helix 12
AB3
A
273 276Right-handed 310
Helix 13
AB4
B
9 21Right-handed alpha
Helix 14
AB5
B
28 43Right-handed alpha
Helix 15
AB6
B
72 87Right-handed alpha
Helix 16
AB7
B
96 104Right-handed alpha
Helix 17
AB8
B
139 150Right-handed alpha
Helix 18
AB9
B
154 161Right-handed alpha
Helix 19
AC1
B
189 192Right-handed 310
Helix 20
AC2
B
193 204Right-handed alpha
Helix 21
AC3
B
205 210Right-handed alpha
Helix 22
AC4
B
237 239Right-handed 310
Helix 23
AC5
B
240 245Right-handed alpha
Helix 24
AC6
B
250 259Right-handed alpha
Helix 25
AC7
B
273 276Right-handed 310
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There are 2 sheets in PDB entry 9VTE. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 183first strand
Strand 2
A
165 173anti-parallel
Strand 3
A
129 137anti-parallel
Strand 4
A
112 120anti-parallel
Strand 5
A
58 68anti-parallel
Strand 6
A
47 55anti-parallel
Strand 7
A
282 289anti-parallel
Strand 8
A
266 271anti-parallel
Strand 9
A
230 235anti-parallel
Strand 10
A
215 221anti-parallel
Strand 11
A
185 187anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 182first strand
Strand 2
B
165 173anti-parallel
Strand 3
B
129 137anti-parallel
Strand 4
B
112 120anti-parallel
Strand 5
B
58 68anti-parallel
Strand 6
B
47 55anti-parallel
Strand 7
B
282 289anti-parallel
Strand 8
B
265 271anti-parallel
Strand 9
B
230 235anti-parallel
Strand 10
B
215 221anti-parallel
Strand 11
B
185 187anti-parallel
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