Analysis of interatomic Contacts of Structural Units in PDB entry:
9VTK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VTK entry

There is 1 chain in PDB entry 9VTK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 26PHE 856
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9VTK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 36Right-handed 310
Helix 2
AA2
A
37 48Right-handed alpha
Helix 3
AA3
A
48 66Right-handed alpha
Helix 4
AA4
A
69 79Right-handed alpha
Helix 5
AA5
A
117 141Right-handed alpha
Helix 6
AA6
A
142 161Right-handed alpha
Helix 7
AA7
A
180 188Right-handed alpha
Helix 8
AA8
A
191 205Right-handed alpha
Helix 9
AA9
A
221 239Right-handed alpha
Helix 10
AB1
A
245 260Right-handed alpha
Helix 11
AB2
A
263 271Right-handed alpha
Helix 12
AB3
A
271 276Right-handed alpha
Helix 13
AB4
A
284 289Right-handed alpha
Helix 14
AB5
A
290 293Right-handed 310
Helix 15
AB6
A
302 324Right-handed alpha
Helix 16
AB7
A
328 333Right-handed alpha
Helix 17
AB8
A
334 345Right-handed alpha
Helix 18
AB9
A
366 380Right-handed alpha
Helix 19
AC1
A
382 399Right-handed alpha
Helix 20
AC2
A
420 426Right-handed alpha
Helix 21
AC3
A
454 457Right-handed 310
Helix 22
AC4
A
468 473Right-handed alpha
Helix 23
AC5
A
513 519Right-handed alpha
Helix 24
AC6
A
522 526Right-handed 310
Helix 25
AC7
A
646 652Right-handed 310
Helix 26
AC8
A
664 668Right-handed 310
Helix 27
AC9
A
723 727Right-handed 310
Helix 28
AD1
A
847 851Right-handed 310
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There are 8 sheets in PDB entry 9VTK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
95 96anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
115 116anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 211first strand
Strand 2
A
216 218anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 453first strand
Strand 2
A
458 463anti-parallel
Strand 3
A
474 479anti-parallel
Strand 4
A
492 497anti-parallel
Strand 5
A
500 503anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
529 531first strand
Strand 2
A
616 622anti-parallel
Strand 3
A
729 737anti-parallel
Strand 4
A
707 714anti-parallel
Strand 5
A
669 677anti-parallel
Strand 6
A
640 641anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 555first strand
Strand 2
A
567 576anti-parallel
Strand 3
A
584 594anti-parallel
Strand 4
A
600 610anti-parallel
Strand 5
A
740 753anti-parallel
Strand 6
A
695 701anti-parallel
Strand 7
A
681 687anti-parallel
Strand 8
A
627 632anti-parallel
Strand 9
A
635 636anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
762 770first strand
Strand 2
A
773 783anti-parallel
Strand 3
A
786 794anti-parallel
Strand 4
A
809 821anti-parallel
Strand 5
A
826 839anti-parallel
Strand 6
A
842 845anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
801 804first strand
Strand 2
A
809 821anti-parallel
Strand 3
A
826 839anti-parallel
Strand 4
A
852 855anti-parallel
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