Analysis of interatomic Contacts of Structural Units in PDB entry:
9VTP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VTP entry

There are 13 chains in PDB entry 9VTP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	C 1	G 60
2	T 22	G 56
3	C 2	G 7
A	MET 1	LYS 345
B	MET 1	LYS 345
C	MET 1	LYS 345
D	MET 1	GLY 346
E	MET 1	LYS 345
F	MET 1	LYS 345
G	THR 3	VAL 635
H	TYR 5	LEU 197
I	TYR 13	TYR 395
J	TYR 13	LEU 396

There are125 helices in PDB entry 9VTP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	49	Right-handed 310
Helix 2	AA2	A	105	123	Right-handed alpha
Helix 3	AA3	A	125	138	Right-handed alpha
Helix 4	AA4	A	139	147	Right-handed 310
Helix 5	AA5	A	179	185	Right-handed alpha
Helix 6	AA6	A	188	202	Right-handed alpha
Helix 7	AA7	A	255	264	Right-handed alpha
Helix 8	AA8	A	300	307	Right-handed alpha
Helix 9	AA9	A	307	316	Right-handed alpha
Helix 10	AB1	A	322	339	Right-handed alpha
Helix 11	AB2	B	45	49	Right-handed 310
Helix 12	AB3	B	63	66	Right-handed 310
Helix 13	AB4	B	105	123	Right-handed alpha
Helix 14	AB5	B	125	138	Right-handed alpha
Helix 15	AB6	B	139	147	Right-handed 310
Helix 16	AB7	B	179	185	Right-handed alpha
Helix 17	AB8	B	188	202	Right-handed alpha
Helix 18	AB9	B	255	264	Right-handed alpha
Helix 19	AC1	B	300	306	Right-handed alpha
Helix 20	AC2	B	307	318	Right-handed alpha
Helix 21	AC3	B	322	339	Right-handed alpha
Helix 22	AC4	C	45	49	Right-handed 310
Helix 23	AC5	C	61	66	Right-handed alpha
Helix 24	AC6	C	105	123	Right-handed alpha
Helix 25	AC7	C	125	138	Right-handed alpha
Helix 26	AC8	C	179	185	Right-handed alpha
Helix 27	AC9	C	188	201	Right-handed alpha
Helix 28	AD1	C	255	264	Right-handed alpha
Helix 29	AD2	C	300	307	Right-handed alpha
Helix 30	AD3	C	307	317	Right-handed alpha
Helix 31	AD4	C	322	339	Right-handed alpha
Helix 32	AD5	D	45	50	Right-handed alpha
Helix 33	AD6	D	63	66	Right-handed 310
Helix 34	AD7	D	105	123	Right-handed alpha
Helix 35	AD8	D	125	138	Right-handed alpha
Helix 36	AD9	D	139	142	Right-handed 310
Helix 37	AE1	D	172	177	Right-handed alpha
Helix 38	AE2	D	179	185	Right-handed alpha
Helix 39	AE3	D	188	202	Right-handed alpha
Helix 40	AE4	D	255	264	Right-handed alpha
Helix 41	AE5	D	300	307	Right-handed alpha
Helix 42	AE6	D	307	317	Right-handed alpha
Helix 43	AE7	D	322	339	Right-handed alpha
Helix 44	AE8	E	46	50	Right-handed 310
Helix 45	AE9	E	63	67	Right-handed 310
Helix 46	AF1	E	105	123	Right-handed alpha
Helix 47	AF2	E	125	138	Right-handed alpha
Helix 48	AF3	E	179	185	Right-handed alpha
Helix 49	AF4	E	188	202	Right-handed alpha
Helix 50	AF5	E	255	264	Right-handed alpha
Helix 51	AF6	E	300	306	Right-handed alpha
Helix 52	AF7	E	307	318	Right-handed alpha
Helix 53	AF8	E	322	339	Right-handed alpha
Helix 54	AF9	F	105	123	Right-handed alpha
Helix 55	AG1	F	125	138	Right-handed alpha
Helix 56	AG2	F	139	147	Right-handed 310
Helix 57	AG3	F	188	202	Right-handed alpha
Helix 58	AG4	F	255	264	Right-handed alpha
Helix 59	AG5	F	300	307	Right-handed alpha
Helix 60	AG6	F	307	316	Right-handed alpha
Helix 61	AG7	F	322	339	Right-handed alpha
Helix 62	AG8	G	4	10	Right-handed alpha
Helix 63	AG9	G	15	24	Right-handed alpha
Helix 64	AH1	G	35	47	Right-handed alpha
Helix 65	AH2	G	48	53	Right-handed 310
Helix 66	AH3	G	58	68	Right-handed alpha
Helix 67	AH4	G	69	81	Right-handed alpha
Helix 68	AH5	G	112	116	Right-handed 310
Helix 69	AH6	G	127	135	Right-handed 310
Helix 70	AH7	G	149	153	Right-handed alpha
Helix 71	AH8	G	158	168	Right-handed alpha
Helix 72	AH9	G	170	184	Right-handed alpha
Helix 73	AI1	G	219	230	Right-handed alpha
Helix 74	AI2	G	232	234	Right-handed 310
Helix 75	AI3	G	249	254	Right-handed alpha
Helix 76	AI4	G	282	293	Right-handed alpha
Helix 77	AI5	G	301	324	Right-handed alpha
Helix 78	AI6	G	372	381	Right-handed alpha
Helix 79	AI7	G	383	389	Right-handed alpha
Helix 80	AI8	G	415	434	Right-handed alpha
Helix 81	AI9	G	496	503	Right-handed alpha
Helix 82	AJ1	G	516	520	Right-handed 310
Helix 83	AJ2	G	528	535	Right-handed alpha
Helix 84	AJ3	G	554	565	Right-handed alpha
Helix 85	AJ4	G	587	591	Right-handed 310
Helix 86	AJ5	G	613	617	Right-handed 310
Helix 87	AJ6	H	16	36	Right-handed alpha
Helix 88	AJ7	H	62	71	Right-handed alpha
Helix 89	AJ8	H	72	81	Right-handed alpha
Helix 90	AJ9	H	104	109	Right-handed alpha
Helix 91	AK1	H	111	125	Right-handed alpha
Helix 92	AK2	I	17	30	Right-handed alpha
Helix 93	AK3	I	36	43	Right-handed alpha
Helix 94	AK4	I	48	52	Right-handed 310
Helix 95	AK5	I	71	87	Right-handed alpha
Helix 96	AK6	I	92	96	Right-handed 310
Helix 97	AK7	I	132	139	Right-handed alpha
Helix 98	AK8	I	143	148	Right-handed 310
Helix 99	AK9	I	197	207	Right-handed alpha
Helix 100	AL1	I	219	233	Right-handed alpha
Helix 101	AL2	I	253	270	Right-handed alpha
Helix 102	AL3	I	279	284	Right-handed alpha
Helix 103	AL4	I	287	292	Right-handed alpha
Helix 104	AL5	I	302	315	Right-handed alpha
Helix 105	AL6	I	331	336	Right-handed alpha
Helix 106	AL7	I	340	350	Right-handed alpha
Helix 107	AL8	I	374	384	Right-handed alpha
Helix 108	AL9	I	391	395	Right-handed 310
Helix 109	AM1	J	17	29	Right-handed alpha
Helix 110	AM2	J	33	49	Right-handed alpha
Helix 111	AM3	J	59	63	Right-handed 310
Helix 112	AM4	J	64	68	Right-handed 310
Helix 113	AM5	J	71	85	Right-handed alpha
Helix 114	AM6	J	132	138	Right-handed 310
Helix 115	AM7	J	143	147	Right-handed 310
Helix 116	AM8	J	197	207	Right-handed alpha
Helix 117	AM9	J	219	234	Right-handed alpha
Helix 118	AN1	J	253	263	Right-handed alpha
Helix 119	AN2	J	266	271	Right-handed alpha
Helix 120	AN3	J	280	289	Right-handed alpha
Helix 121	AN4	J	302	315	Right-handed alpha
Helix 122	AN5	J	331	337	Right-handed alpha
Helix 123	AN6	J	340	351	Right-handed alpha
Helix 124	AN7	J	374	384	Right-handed alpha
Helix 125	AN8	J	391	395	Right-handed 310

There are 47 sheets in PDB entry 9VTP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	103	first strand
Strand 2	A	7	9	anti-parallel
Strand 3	A	340	341	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	84	94	anti-parallel
Strand 3	A	18	23	anti-parallel
Strand 4	A	206	216	first strand
Strand 5	A	151	158	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	18	23	anti-parallel
Strand 3	A	84	94	anti-parallel
Strand 4	A	249	254	first strand
Strand 5	A	243	246	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	41	first strand
Strand 2	A	69	75	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	267	first strand
Strand 2	A	277	278	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	103	first strand
Strand 2	B	7	9	anti-parallel
Strand 3	B	340	341	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	15	first strand
Strand 2	B	84	94	anti-parallel
Strand 3	B	18	24	anti-parallel
Strand 4	B	206	216	first strand
Strand 5	B	151	158	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	18	24	anti-parallel
Strand 3	B	84	94	anti-parallel
Strand 4	B	249	254	first strand
Strand 5	B	243	246	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	42	first strand
Strand 2	B	68	75	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	267	first strand
Strand 2	B	277	278	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	285	first strand
Strand 2	B	290	292	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	C	7	9	anti-parallel
Strand 3	C	340	341	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	84	94	anti-parallel
Strand 3	C	18	23	anti-parallel
Strand 4	C	206	216	first strand
Strand 5	C	151	158	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	18	23	anti-parallel
Strand 3	C	84	94	anti-parallel
Strand 4	C	249	254	first strand
Strand 5	C	243	246	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	41	first strand
Strand 2	C	69	76	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	267	first strand
Strand 2	C	277	278	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	285	first strand
Strand 2	C	290	292	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	103	first strand
Strand 2	D	7	9	anti-parallel
Strand 3	D	340	341	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	84	94	anti-parallel
Strand 3	D	18	23	anti-parallel
Strand 4	D	206	216	first strand
Strand 5	D	151	158	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	31	first strand
Strand 2	D	18	23	anti-parallel
Strand 3	D	84	94	anti-parallel
Strand 4	D	249	254	first strand
Strand 5	D	243	246	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	42	first strand
Strand 2	D	68	76	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	267	first strand
Strand 2	D	277	278	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	285	first strand
Strand 2	D	290	292	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	103	first strand
Strand 2	E	7	9	anti-parallel
Strand 3	E	340	341	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	15	first strand
Strand 2	E	84	94	anti-parallel
Strand 3	E	18	23	anti-parallel
Strand 4	E	206	216	first strand
Strand 5	E	151	158	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand
Strand 2	E	18	23	anti-parallel
Strand 3	E	84	94	anti-parallel
Strand 4	E	249	254	first strand
Strand 5	E	243	246	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	41	first strand
Strand 2	E	69	75	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	284	285	first strand
Strand 2	E	290	291	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	9	first strand
Strand 2	F	340	341	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	15	first strand
Strand 2	F	84	94	anti-parallel
Strand 3	F	19	23	anti-parallel
Strand 4	F	29	30	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	15	first strand
Strand 2	F	84	94	anti-parallel
Strand 3	F	206	214	anti-parallel
Strand 4	F	153	158	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	75	first strand
Strand 2	F	35	36	anti-parallel
Strand 3	H	142	143	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	243	246	first strand
Strand 2	F	249	252	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	283	284	first strand
Strand 2	F	291	292	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	31	first strand
Strand 2	G	139	142	parallel
Strand 3	G	145	148	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	85	86	first strand
Strand 2	G	217	218	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	99	first strand
Strand 2	G	188	190	anti-parallel

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There are 8 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	201	204	first strand
Strand 2	G	210	215	anti-parallel
Strand 3	G	593	606	parallel
Strand 4	G	542	546	anti-parallel
Strand 5	G	438	452	anti-parallel
Strand 6	G	478	490	anti-parallel
Strand 7	G	391	403	anti-parallel
Strand 8	G	512	514	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	201	204	first strand
Strand 2	G	210	215	anti-parallel
Strand 3	G	593	606	parallel
Strand 4	G	568	577	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	236	240	first strand
Strand 2	G	257	262	anti-parallel
Strand 3	G	410	411	parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	461	462	first strand
Strand 2	G	468	469	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	619	624	first strand
Strand 2	G	627	632	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	41	43	first strand
Strand 2	H	55	59	anti-parallel
Strand 3	H	6	10	anti-parallel
Strand 4	H	84	86	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	100	103	first strand
Strand 2	H	159	169	anti-parallel
Strand 3	H	150	156	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	98	104	first strand
Strand 2	I	110	114	anti-parallel
Strand 3	I	117	119	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	327	328	first strand
Strand 2	I	372	373	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	98	100	first strand
Strand 2	J	111	114	anti-parallel
Strand 3	J	117	120	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VTP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VTP