Analysis of interatomic Contacts of Structural Units in PDB entry:
9VTQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VTQ entry

There are 13 chains in PDB entry 9VTQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	C 1	G 60
2	C 21	C 56
3	G 2	A 7
A	MET 1	LYS 345
B	MET 1	LYS 345
C	MET 1	LYS 345
D	MET 1	GLY 346
E	MET 1	LYS 345
F	MET 1	LYS 345
G	LYS 17	VAL 635
H	TYR 5	LEU 197
I	SER 12	TYR 395
J	PRO 14	TYR 395

There are131 helices in PDB entry 9VTQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	50	Right-handed alpha
Helix 2	AA2	A	105	123	Right-handed alpha
Helix 3	AA3	A	125	138	Right-handed alpha
Helix 4	AA4	A	179	185	Right-handed alpha
Helix 5	AA5	A	188	202	Right-handed alpha
Helix 6	AA6	A	255	264	Right-handed alpha
Helix 7	AA7	A	300	306	Right-handed alpha
Helix 8	AA8	A	307	317	Right-handed alpha
Helix 9	AA9	A	322	339	Right-handed alpha
Helix 10	AB1	B	45	49	Right-handed 310
Helix 11	AB2	B	61	66	Right-handed alpha
Helix 12	AB3	B	105	123	Right-handed alpha
Helix 13	AB4	B	125	138	Right-handed alpha
Helix 14	AB5	B	139	147	Right-handed 310
Helix 15	AB6	B	179	185	Right-handed alpha
Helix 16	AB7	B	188	202	Right-handed alpha
Helix 17	AB8	B	255	264	Right-handed alpha
Helix 18	AB9	B	300	307	Right-handed alpha
Helix 19	AC1	B	307	317	Right-handed alpha
Helix 20	AC2	B	322	339	Right-handed alpha
Helix 21	AC3	C	45	49	Right-handed 310
Helix 22	AC4	C	63	67	Right-handed 310
Helix 23	AC5	C	105	123	Right-handed alpha
Helix 24	AC6	C	125	138	Right-handed alpha
Helix 25	AC7	C	179	185	Right-handed alpha
Helix 26	AC8	C	188	201	Right-handed alpha
Helix 27	AC9	C	255	264	Right-handed alpha
Helix 28	AD1	C	300	307	Right-handed alpha
Helix 29	AD2	C	307	317	Right-handed alpha
Helix 30	AD3	C	322	339	Right-handed alpha
Helix 31	AD4	D	45	49	Right-handed 310
Helix 32	AD5	D	63	66	Right-handed 310
Helix 33	AD6	D	105	123	Right-handed alpha
Helix 34	AD7	D	125	138	Right-handed alpha
Helix 35	AD8	D	144	148	Right-handed 310
Helix 36	AD9	D	172	177	Right-handed alpha
Helix 37	AE1	D	179	185	Right-handed alpha
Helix 38	AE2	D	188	202	Right-handed alpha
Helix 39	AE3	D	255	264	Right-handed alpha
Helix 40	AE4	D	300	307	Right-handed alpha
Helix 41	AE5	D	307	317	Right-handed alpha
Helix 42	AE6	D	322	339	Right-handed alpha
Helix 43	AE7	E	51	55	Right-handed 310
Helix 44	AE8	E	61	66	Right-handed alpha
Helix 45	AE9	E	105	123	Right-handed alpha
Helix 46	AF1	E	125	138	Right-handed alpha
Helix 47	AF2	E	144	148	Right-handed 310
Helix 48	AF3	E	179	185	Right-handed alpha
Helix 49	AF4	E	188	202	Right-handed alpha
Helix 50	AF5	E	255	264	Right-handed alpha
Helix 51	AF6	E	300	307	Right-handed alpha
Helix 52	AF7	E	307	318	Right-handed alpha
Helix 53	AF8	E	322	339	Right-handed alpha
Helix 54	AF9	F	105	123	Right-handed alpha
Helix 55	AG1	F	125	138	Right-handed alpha
Helix 56	AG2	F	139	147	Right-handed 310
Helix 57	AG3	F	172	177	Right-handed alpha
Helix 58	AG4	F	188	202	Right-handed alpha
Helix 59	AG5	F	255	264	Right-handed alpha
Helix 60	AG6	F	294	298	Right-handed 310
Helix 61	AG7	F	300	306	Right-handed alpha
Helix 62	AG8	F	307	316	Right-handed alpha
Helix 63	AG9	F	322	339	Right-handed alpha
Helix 64	AH1	G	18	24	Right-handed alpha
Helix 65	AH2	G	35	46	Right-handed alpha
Helix 66	AH3	G	59	67	Right-handed alpha
Helix 67	AH4	G	69	77	Right-handed alpha
Helix 68	AH5	G	78	82	Right-handed 310
Helix 69	AH6	G	112	116	Right-handed 310
Helix 70	AH7	G	126	128	Right-handed 310
Helix 71	AH8	G	129	134	Right-handed alpha
Helix 72	AH9	G	149	153	Right-handed alpha
Helix 73	AI1	G	158	167	Right-handed alpha
Helix 74	AI2	G	171	184	Right-handed alpha
Helix 75	AI3	G	219	230	Right-handed alpha
Helix 76	AI4	G	232	234	Right-handed 310
Helix 77	AI5	G	243	248	Right-handed alpha
Helix 78	AI6	G	248	254	Right-handed alpha
Helix 79	AI7	G	266	270	Right-handed 310
Helix 80	AI8	G	282	296	Right-handed alpha
Helix 81	AI9	G	301	325	Right-handed alpha
Helix 82	AJ1	G	337	349	Right-handed alpha
Helix 83	AJ2	G	353	357	Right-handed 310
Helix 84	AJ3	G	359	375	Right-handed alpha
Helix 85	AJ4	G	415	432	Right-handed alpha
Helix 86	AJ5	G	496	502	Right-handed alpha
Helix 87	AJ6	G	516	520	Right-handed 310
Helix 88	AJ7	G	528	535	Right-handed alpha
Helix 89	AJ8	G	554	563	Right-handed alpha
Helix 90	AJ9	G	587	591	Right-handed 310
Helix 91	AK1	G	613	617	Right-handed 310
Helix 92	AK2	H	16	35	Right-handed alpha
Helix 93	AK3	H	62	71	Right-handed alpha
Helix 94	AK4	H	72	81	Right-handed alpha
Helix 95	AK5	H	104	111	Right-handed alpha
Helix 96	AK6	H	111	126	Right-handed alpha
Helix 97	AK7	H	134	139	Right-handed 310
Helix 98	AK8	I	17	30	Right-handed alpha
Helix 99	AK9	I	33	47	Right-handed alpha
Helix 100	AL1	I	48	53	Right-handed 310
Helix 101	AL2	I	71	85	Right-handed alpha
Helix 102	AL3	I	132	138	Right-handed alpha
Helix 103	AL4	I	143	148	Right-handed 310
Helix 104	AL5	I	172	177	Right-handed alpha
Helix 105	AL6	I	201	208	Right-handed alpha
Helix 106	AL7	I	219	234	Right-handed alpha
Helix 107	AL8	I	241	251	Right-handed alpha
Helix 108	AL9	I	251	270	Right-handed alpha
Helix 109	AM1	I	284	289	Right-handed alpha
Helix 110	AM2	I	302	315	Right-handed alpha
Helix 111	AM3	I	321	325	Right-handed 310
Helix 112	AM4	I	329	337	Right-handed alpha
Helix 113	AM5	I	340	351	Right-handed alpha
Helix 114	AM6	I	373	384	Right-handed alpha
Helix 115	AM7	J	22	29	Right-handed alpha
Helix 116	AM8	J	33	49	Right-handed alpha
Helix 117	AM9	J	59	63	Right-handed 310
Helix 118	AN1	J	71	83	Right-handed alpha
Helix 119	AN2	J	132	139	Right-handed alpha
Helix 120	AN3	J	143	148	Right-handed 310
Helix 121	AN4	J	172	177	Right-handed alpha
Helix 122	AN5	J	197	207	Right-handed alpha
Helix 123	AN6	J	219	233	Right-handed alpha
Helix 124	AN7	J	241	243	Right-handed 310
Helix 125	AN8	J	244	249	Right-handed alpha
Helix 126	AN9	J	251	271	Right-handed alpha
Helix 127	AO1	J	284	289	Right-handed alpha
Helix 128	AO2	J	302	310	Right-handed alpha
Helix 129	AO3	J	342	350	Right-handed alpha
Helix 130	AO4	J	376	385	Right-handed alpha
Helix 131	AO5	J	391	395	Right-handed 310

There are 48 sheets in PDB entry 9VTQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	103	first strand
Strand 2	A	7	9	anti-parallel
Strand 3	A	340	341	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	84	94	anti-parallel
Strand 3	A	18	23	anti-parallel
Strand 4	A	206	216	first strand
Strand 5	A	151	158	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	18	23	anti-parallel
Strand 3	A	84	94	anti-parallel
Strand 4	A	249	254	first strand
Strand 5	A	243	246	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	41	first strand
Strand 2	A	69	75	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	267	first strand
Strand 2	A	277	278	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	290	291	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	103	first strand
Strand 2	B	7	9	anti-parallel
Strand 3	B	340	341	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	15	first strand
Strand 2	B	84	94	anti-parallel
Strand 3	B	18	24	anti-parallel
Strand 4	B	206	216	first strand
Strand 5	B	151	158	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	18	24	anti-parallel
Strand 3	B	84	94	anti-parallel
Strand 4	B	249	254	first strand
Strand 5	B	243	246	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	42	first strand
Strand 2	B	68	76	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	285	first strand
Strand 2	B	290	292	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	C	7	9	anti-parallel
Strand 3	C	340	341	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	84	94	anti-parallel
Strand 3	C	18	23	anti-parallel
Strand 4	C	206	216	first strand
Strand 5	C	151	158	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	18	23	anti-parallel
Strand 3	C	84	94	anti-parallel
Strand 4	C	249	254	first strand
Strand 5	C	243	246	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	41	first strand
Strand 2	C	69	75	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	285	first strand
Strand 2	C	290	292	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	103	first strand
Strand 2	D	7	9	anti-parallel
Strand 3	D	340	341	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	84	94	anti-parallel
Strand 3	D	18	23	anti-parallel
Strand 4	D	206	216	first strand
Strand 5	D	151	158	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	31	first strand
Strand 2	D	18	23	anti-parallel
Strand 3	D	84	94	anti-parallel
Strand 4	D	249	254	first strand
Strand 5	D	243	246	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	42	first strand
Strand 2	D	68	75	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	267	first strand
Strand 2	D	277	278	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	285	first strand
Strand 2	D	290	292	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	103	first strand
Strand 2	E	7	9	anti-parallel
Strand 3	E	340	341	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	15	first strand
Strand 2	E	84	94	anti-parallel
Strand 3	E	18	23	anti-parallel
Strand 4	E	206	216	first strand
Strand 5	E	151	158	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand
Strand 2	E	18	23	anti-parallel
Strand 3	E	84	94	anti-parallel
Strand 4	E	249	254	first strand
Strand 5	E	243	246	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	42	first strand
Strand 2	E	68	75	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	265	267	first strand
Strand 2	E	277	278	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	284	285	first strand
Strand 2	E	290	291	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	9	first strand
Strand 2	F	340	341	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	14	first strand
Strand 2	F	84	94	anti-parallel
Strand 3	F	22	23	anti-parallel
Strand 4	F	29	30	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	14	first strand
Strand 2	F	84	94	anti-parallel
Strand 3	F	206	216	anti-parallel
Strand 4	F	151	158	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	19	first strand
Strand 2	F	249	254	anti-parallel
Strand 3	F	243	246	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	75	first strand
Strand 2	F	35	36	anti-parallel
Strand 3	H	142	143	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	283	285	first strand
Strand 2	F	290	292	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	85	86	first strand
Strand 2	G	217	218	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	99	first strand
Strand 2	G	188	190	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	139	142	first strand
Strand 2	G	145	148	anti-parallel

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There are 8 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	201	204	first strand
Strand 2	G	210	215	anti-parallel
Strand 3	G	593	606	parallel
Strand 4	G	542	546	anti-parallel
Strand 5	G	441	452	anti-parallel
Strand 6	G	478	488	anti-parallel
Strand 7	G	391	403	anti-parallel
Strand 8	G	512	514	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	201	204	first strand
Strand 2	G	210	215	anti-parallel
Strand 3	G	593	606	parallel
Strand 4	G	568	577	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	236	239	first strand
Strand 2	G	258	261	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	461	462	first strand
Strand 2	G	468	469	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	619	624	first strand
Strand 2	G	627	632	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	55	58	first strand
Strand 2	H	6	10	anti-parallel
Strand 3	H	84	85	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	98	99	first strand
Strand 2	H	195	196	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	150	155	first strand
Strand 2	H	161	166	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	99	105	first strand
Strand 2	I	109	113	anti-parallel
Strand 3	I	118	120	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	98	101	first strand
Strand 2	J	111	114	anti-parallel
Strand 3	J	117	120	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	181	182	first strand
Strand 2	J	187	188	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VTQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VTQ