Analysis of interatomic Contacts of Structural Units in PDB entry:
9VTS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VTS entry

There are 9 chains in PDB entry 9VTS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 32	PRO 187
B	VAL 503	HIS 602
G	GLN 1	THR 125
C	SER 32	PRO 187
D	VAL 503	HIS 602
H	GLN 1	THR 125
E	SER 32	PRO 187
F	VAL 503	HIS 602
I	GLN 1	THR 125

There are 24 helices in PDB entry 9VTS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	61	Right-handed 310
Helix 2	AA2	A	71	74	Right-handed 310
Helix 3	AA3	A	78	85	Right-handed alpha
Helix 4	AA4	B	538	542	Right-handed 310
Helix 5	AA5	B	553	576	Right-handed alpha
Helix 6	AA6	B	583	598	Right-handed alpha
Helix 7	AA7	G	86	90	Right-handed 310
Helix 8	AA8	G	111	115	Right-handed 310
Helix 9	AA9	C	59	61	Right-handed 310
Helix 10	AB1	C	71	74	Right-handed 310
Helix 11	AB2	C	78	85	Right-handed alpha
Helix 12	AB3	D	538	542	Right-handed 310
Helix 13	AB4	D	553	576	Right-handed alpha
Helix 14	AB5	D	583	598	Right-handed alpha
Helix 15	AB6	H	86	90	Right-handed 310
Helix 16	AB7	H	111	115	Right-handed 310
Helix 17	AB8	E	59	61	Right-handed 310
Helix 18	AB9	E	71	74	Right-handed 310
Helix 19	AC1	E	78	85	Right-handed alpha
Helix 20	AC2	F	538	542	Right-handed 310
Helix 21	AC3	F	553	576	Right-handed alpha
Helix 22	AC4	F	583	598	Right-handed alpha
Helix 23	AC5	I	86	90	Right-handed 310
Helix 24	AC6	I	111	115	Right-handed 310

There are 24 sheets in PDB entry 9VTS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	46	first strand
Strand 2	A	35	39	anti-parallel
Strand 3	A	177	185	parallel
Strand 4	A	63	69	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	46	first strand
Strand 2	A	35	39	anti-parallel
Strand 3	A	177	185	parallel
Strand 4	A	159	161	anti-parallel
Strand 5	A	165	167	anti-parallel
Strand 6	A	96	98	anti-parallel
Strand 7	B	580	581	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	89	first strand
Strand 2	A	151	154	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	111	first strand
Strand 2	A	135	141	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	514	519	first strand
Strand 2	B	544	549	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	5	first strand
Strand 2	G	18	24	anti-parallel
Strand 3	G	77	82	anti-parallel
Strand 4	G	67	71	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	59	first strand
Strand 2	G	46	51	anti-parallel
Strand 3	G	33	39	anti-parallel
Strand 4	G	92	98	anti-parallel
Strand 5	G	116	118	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	59	first strand
Strand 2	G	46	51	anti-parallel
Strand 3	G	33	39	anti-parallel
Strand 4	G	92	98	anti-parallel
Strand 5	G	122	123	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	46	first strand
Strand 2	C	35	39	anti-parallel
Strand 3	C	177	185	parallel
Strand 4	C	63	69	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	46	first strand
Strand 2	C	35	39	anti-parallel
Strand 3	C	177	185	parallel
Strand 4	C	159	161	anti-parallel
Strand 5	C	165	167	anti-parallel
Strand 6	C	96	98	anti-parallel
Strand 7	D	580	581	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	89	first strand
Strand 2	C	151	154	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	111	first strand
Strand 2	C	135	141	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	514	519	first strand
Strand 2	D	544	549	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	5	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	71	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	51	anti-parallel
Strand 3	H	33	39	anti-parallel
Strand 4	H	92	98	anti-parallel
Strand 5	H	116	118	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	51	anti-parallel
Strand 3	H	33	39	anti-parallel
Strand 4	H	92	98	anti-parallel
Strand 5	H	122	123	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	46	first strand
Strand 2	E	35	39	anti-parallel
Strand 3	E	177	185	parallel
Strand 4	E	63	69	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	46	first strand
Strand 2	E	35	39	anti-parallel
Strand 3	E	177	185	parallel
Strand 4	E	159	161	anti-parallel
Strand 5	E	165	167	anti-parallel
Strand 6	E	96	98	anti-parallel
Strand 7	F	580	581	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	89	first strand
Strand 2	E	151	154	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	111	first strand
Strand 2	E	135	141	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	514	519	first strand
Strand 2	F	544	549	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	5	first strand
Strand 2	I	18	24	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	67	71	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	57	59	first strand
Strand 2	I	46	51	anti-parallel
Strand 3	I	33	39	anti-parallel
Strand 4	I	92	98	anti-parallel
Strand 5	I	116	118	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	57	59	first strand
Strand 2	I	46	51	anti-parallel
Strand 3	I	33	39	anti-parallel
Strand 4	I	92	98	anti-parallel
Strand 5	I	122	123	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VTS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VTS