Analysis of interatomic Contacts of Structural Units in PDB entry:
9VTX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VTX entry

There are 16 chains in PDB entry 9VTX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 11	THR 123
B	PRO 11	THR 123
C	PRO 11	THR 123
D	PRO 11	THR 123
E	PRO 11	THR 123
F	PRO 11	THR 123
G	PRO 11	THR 123
H	PRO 11	THR 123
I	PRO 11	THR 123
J	PRO 11	THR 123
K	PRO 11	THR 123
L	PRO 11	THR 123
M	PRO 11	THR 123
N	PRO 11	THR 123
O	PRO 11	THR 123
P	PRO 11	THR 123

There are no helices in PDB entry 9VTX

There are 11 sheets in PDB entry 9VTX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	13	16	first strand
Strand 2	F	13	16	parallel
Strand 3	J	13	16	parallel
Strand 4	O	13	16	parallel
Strand 5	L	13	16	parallel
Strand 6	I	13	16	parallel
Strand 7	D	13	16	parallel
Strand 8	A	13	16	parallel
Strand 9	B	13	16	parallel
Strand 10	E	13	16	parallel
Strand 11	C	13	16	parallel
Strand 12	H	13	16	parallel
Strand 13	N	13	16	parallel
Strand 14	G	13	16	parallel
Strand 15	K	13	16	parallel
Strand 16	P	13	16	parallel

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There are 16 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	19	21	first strand
Strand 2	F	19	21	parallel
Strand 3	J	19	21	parallel
Strand 4	O	19	21	parallel
Strand 5	L	19	21	parallel
Strand 6	I	19	21	parallel
Strand 7	D	19	21	parallel
Strand 8	A	19	21	parallel
Strand 9	B	19	21	parallel
Strand 10	E	19	21	parallel
Strand 11	C	19	21	parallel
Strand 12	H	19	21	parallel
Strand 13	N	19	21	parallel
Strand 14	G	19	21	parallel
Strand 15	K	19	21	parallel
Strand 16	P	19	21	parallel

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There are 16 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	25	27	first strand
Strand 2	F	25	27	parallel
Strand 3	J	25	27	parallel
Strand 4	O	25	27	parallel
Strand 5	L	25	27	parallel
Strand 6	I	25	27	parallel
Strand 7	D	25	27	parallel
Strand 8	A	25	27	parallel
Strand 9	B	25	27	parallel
Strand 10	E	25	27	parallel
Strand 11	C	25	27	parallel
Strand 12	H	25	27	parallel
Strand 13	N	25	27	parallel
Strand 14	G	25	27	parallel
Strand 15	K	25	27	parallel
Strand 16	P	25	27	parallel

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There are 16 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	30	33	first strand
Strand 2	F	30	33	parallel
Strand 3	J	30	33	parallel
Strand 4	O	30	33	parallel
Strand 5	L	30	33	parallel
Strand 6	I	30	33	parallel
Strand 7	D	30	33	parallel
Strand 8	A	30	33	parallel
Strand 9	B	30	33	parallel
Strand 10	E	30	33	parallel
Strand 11	C	30	33	parallel
Strand 12	H	30	33	parallel
Strand 13	N	30	33	parallel
Strand 14	G	30	33	parallel
Strand 15	K	30	33	parallel
Strand 16	P	30	33	parallel

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There are 16 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	59	66	first strand
Strand 2	F	59	66	parallel
Strand 3	J	59	66	parallel
Strand 4	O	59	66	parallel
Strand 5	L	59	66	parallel
Strand 6	I	59	66	parallel
Strand 7	D	59	66	parallel
Strand 8	A	59	66	parallel
Strand 9	B	59	66	parallel
Strand 10	E	59	66	parallel
Strand 11	C	59	66	parallel
Strand 12	H	59	66	parallel
Strand 13	N	59	66	parallel
Strand 14	G	59	66	parallel
Strand 15	K	59	66	parallel
Strand 16	P	59	66	parallel

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There are 16 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	71	75	first strand
Strand 2	F	71	75	parallel
Strand 3	J	71	75	parallel
Strand 4	O	71	75	parallel
Strand 5	L	71	75	parallel
Strand 6	I	71	75	parallel
Strand 7	D	71	75	parallel
Strand 8	A	71	75	parallel
Strand 9	B	71	75	parallel
Strand 10	E	71	75	parallel
Strand 11	C	71	75	parallel
Strand 12	H	71	75	parallel
Strand 13	N	71	75	parallel
Strand 14	G	71	75	parallel
Strand 15	K	71	75	parallel
Strand 16	P	71	75	parallel

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There are 16 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	79	80	first strand
Strand 2	F	79	80	parallel
Strand 3	J	79	80	parallel
Strand 4	O	79	80	parallel
Strand 5	L	79	80	parallel
Strand 6	I	79	80	parallel
Strand 7	D	79	80	parallel
Strand 8	A	79	80	parallel
Strand 9	B	79	80	parallel
Strand 10	E	79	80	parallel
Strand 11	C	79	80	parallel
Strand 12	H	79	80	parallel
Strand 13	N	79	80	parallel
Strand 14	G	79	80	parallel
Strand 15	K	79	80	parallel
Strand 16	P	79	80	parallel

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There are 16 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	92	98	first strand
Strand 2	F	92	98	parallel
Strand 3	J	92	98	parallel
Strand 4	O	92	98	parallel
Strand 5	L	92	98	parallel
Strand 6	I	92	98	parallel
Strand 7	D	92	98	parallel
Strand 8	A	92	98	parallel
Strand 9	B	92	98	parallel
Strand 10	E	92	98	parallel
Strand 11	C	92	98	parallel
Strand 12	H	92	98	parallel
Strand 13	N	92	98	parallel
Strand 14	G	92	98	parallel
Strand 15	K	92	98	parallel
Strand 16	P	92	98	parallel

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There are 16 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	103	110	first strand
Strand 2	F	103	110	parallel
Strand 3	J	103	110	parallel
Strand 4	O	103	110	parallel
Strand 5	L	103	110	parallel
Strand 6	I	103	110	parallel
Strand 7	D	103	110	parallel
Strand 8	A	103	110	parallel
Strand 9	B	103	110	parallel
Strand 10	E	103	110	parallel
Strand 11	C	103	110	parallel
Strand 12	H	103	110	parallel
Strand 13	N	103	110	parallel
Strand 14	G	103	110	parallel
Strand 15	K	103	110	parallel
Strand 16	P	103	110	parallel

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There are 16 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	114	115	first strand
Strand 2	F	114	115	parallel
Strand 3	J	114	115	parallel
Strand 4	O	114	115	parallel
Strand 5	L	114	115	parallel
Strand 6	I	114	115	parallel
Strand 7	D	114	115	parallel
Strand 8	A	114	115	parallel
Strand 9	B	114	115	parallel
Strand 10	E	114	115	parallel
Strand 11	C	114	115	parallel
Strand 12	H	114	115	parallel
Strand 13	N	114	115	parallel
Strand 14	G	114	115	parallel
Strand 15	K	114	115	parallel
Strand 16	P	114	115	parallel

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There are 16 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	118	121	first strand
Strand 2	F	118	121	parallel
Strand 3	J	118	122	parallel
Strand 4	O	118	122	parallel
Strand 5	L	118	121	parallel
Strand 6	I	118	121	parallel
Strand 7	D	118	121	parallel
Strand 8	A	118	121	parallel
Strand 9	B	118	122	parallel
Strand 10	E	118	122	parallel
Strand 11	C	118	121	parallel
Strand 12	H	118	121	parallel
Strand 13	N	118	121	parallel
Strand 14	G	118	121	parallel
Strand 15	K	118	122	parallel
Strand 16	P	118	122	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VTX

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VTX