Analysis of interatomic Contacts of Structural Units in PDB entry:
9VU6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VU6 entry

There are 6 chains in PDB entry 9VU6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 135LEU 372
B
 GLU 43GLU 324
C
 THR 152GLN 184
D
 ASN 9LYS 137
E
 G 2 A 23
F
 T 5 C 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9VU6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
135 166Right-handed alpha
Helix 2
AA2
A
187 199Right-handed alpha
Helix 3
AA3
A
233 238Right-handed alpha
Helix 4
AA4
A
239 243Right-handed alpha
Helix 5
AA5
A
258 269Right-handed alpha
Helix 6
AA6
A
336 346Right-handed alpha
Helix 7
AA7
B
47 53Right-handed alpha
Helix 8
AA8
B
55 59Right-handed 310
Helix 9
AA9
B
110 116Right-handed alpha
Helix 10
AB1
B
137 147Right-handed alpha
Helix 11
AB2
B
163 174Right-handed alpha
Helix 12
AB3
B
201 209Right-handed alpha
Helix 13
AB4
B
216 220Right-handed 310
Helix 14
AB5
B
272 287Right-handed alpha
Helix 15
AB6
B
288 291Right-handed 310
Helix 16
AB7
C
153 157Right-handed alpha
Helix 17
AB8
C
162 184Right-handed alpha
Helix 18
AB9
D
13 25Right-handed alpha
Helix 19
AC1
D
38 43Right-handed alpha
Helix 20
AC2
D
51 62Right-handed alpha
Helix 21
AC3
D
69 76Right-handed alpha
Helix 22
AC4
D
83 96Right-handed alpha
Helix 23
AC5
D
100 104Right-handed 310
Helix 24
AC6
D
109 127Right-handed alpha
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There are 2 sheets in PDB entry 9VU6. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 180first strand
Strand 2
A
365 369parallel
Strand 3
A
351 354parallel
Strand 4
A
203 208parallel
Strand 5
A
244 253parallel
Strand 6
A
299 306anti-parallel
Strand 7
A
271 281anti-parallel
Strand 8
A
323 327parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 73first strand
Strand 2
B
318 319parallel
Strand 3
B
302 305parallel
Strand 4
B
91 96parallel
Strand 5
B
124 133parallel
Strand 6
B
235 240anti-parallel
Strand 7
B
151 162anti-parallel
Strand 8
B
258 263parallel
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