Analysis of interatomic Contacts of Structural Units in PDB entry:
9VUA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VUA entry

There are 8 chains in PDB entry 9VUA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 ASP 80ALA 147
F
 SER 81ALA 147
G
 SER 81ALA 147
A
 GLY 118ASN 473
B
 GLY 118ASN 473
C
 GLY 118ASN 473
D
 GLY 118GLU 398
H
 CYS 1HIS 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 9VUA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
82 88Right-handed alpha
Helix 2
AA2
E
101 110Right-handed alpha
Helix 3
AA3
E
117 129Right-handed alpha
Helix 4
AA4
E
137 146Right-handed alpha
Helix 5
AA5
F
82 91Right-handed alpha
Helix 6
AA6
F
101 111Right-handed alpha
Helix 7
AA7
F
117 129Right-handed alpha
Helix 8
AA8
F
137 146Right-handed alpha
Helix 9
AA9
G
82 88Right-handed alpha
Helix 10
AB1
G
101 109Right-handed alpha
Helix 11
AB2
G
117 129Right-handed alpha
Helix 12
AB3
G
137 145Right-handed alpha
Helix 13
AB4
A
119 157Right-handed alpha
Helix 14
AB5
A
164 200Right-handed alpha
Helix 15
AB6
A
204 209Right-handed alpha
Helix 16
AB7
A
210 224Right-handed alpha
Helix 17
AB8
A
254 260Right-handed alpha
Helix 18
AB9
A
261 265Right-handed 310
Helix 19
AC1
A
266 277Right-handed alpha
Helix 20
AC2
A
277 282Right-handed alpha
Helix 21
AC3
A
297 309Right-handed alpha
Helix 22
AC4
A
309 334Right-handed alpha
Helix 23
AC5
A
335 337Right-handed 310
Helix 24
AC6
A
344 357Right-handed alpha
Helix 25
AC7
A
368 397Right-handed alpha
Helix 26
AC8
A
400 438Right-handed alpha
Helix 27
AC9
A
444 473Right-handed alpha
Helix 28
AD1
B
119 157Right-handed alpha
Helix 29
AD2
B
164 200Right-handed alpha
Helix 30
AD3
B
204 209Right-handed 310
Helix 31
AD4
B
210 224Right-handed alpha
Helix 32
AD5
B
254 260Right-handed alpha
Helix 33
AD6
B
261 265Right-handed 310
Helix 34
AD7
B
266 277Right-handed alpha
Helix 35
AD8
B
282 293Right-handed alpha
Helix 36
AD9
B
297 309Right-handed alpha
Helix 37
AE1
B
309 334Right-handed alpha
Helix 38
AE2
B
335 337Right-handed 310
Helix 39
AE3
B
344 357Right-handed alpha
Helix 40
AE4
B
368 397Right-handed alpha
Helix 41
AE5
B
400 438Right-handed alpha
Helix 42
AE6
B
444 473Right-handed alpha
Helix 43
AE7
C
119 156Right-handed alpha
Helix 44
AE8
C
164 200Right-handed alpha
Helix 45
AE9
C
204 209Right-handed 310
Helix 46
AF1
C
210 224Right-handed alpha
Helix 47
AF2
C
254 260Right-handed alpha
Helix 48
AF3
C
261 265Right-handed 310
Helix 49
AF4
C
266 276Right-handed alpha
Helix 50
AF5
C
277 282Right-handed alpha
Helix 51
AF6
C
282 292Right-handed alpha
Helix 52
AF7
C
297 309Right-handed alpha
Helix 53
AF8
C
309 334Right-handed alpha
Helix 54
AF9
C
344 357Right-handed alpha
Helix 55
AG1
C
368 397Right-handed alpha
Helix 56
AG2
C
400 438Right-handed alpha
Helix 57
AG3
C
444 473Right-handed alpha
Helix 58
AG4
D
119 157Right-handed alpha
Helix 59
AG5
D
164 200Right-handed alpha
Helix 60
AG6
D
204 208Right-handed 310
Helix 61
AG7
D
210 224Right-handed alpha
Helix 62
AG8
D
254 260Right-handed alpha
Helix 63
AG9
D
261 265Right-handed 310
Helix 64
AH1
D
266 277Right-handed alpha
Helix 65
AH2
D
277 282Right-handed alpha
Helix 66
AH3
D
282 292Right-handed alpha
Helix 67
AH4
D
297 309Right-handed alpha
Helix 68
AH5
D
309 334Right-handed alpha
Helix 69
AH6
D
344 357Right-handed alpha
Helix 70
AH7
D
368 397Right-handed alpha
Helix 71
AH8
H
8 16Right-handed alpha
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There are 4 sheets in PDB entry 9VUA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 240first strand
Strand 2
A
247 253anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 240first strand
Strand 2
B
247 253anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
234 240first strand
Strand 2
C
247 253anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
234 240first strand
Strand 2
D
247 253anti-parallel
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