Analysis of interatomic Contacts of Structural Units in PDB entry:
9VUC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VUC entry

There are 7 chains in PDB entry 9VUC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 ASP 80ALA 147
F
 SER 81ALA 147
G
 SER 81ALA 147
A
 GLY 118ASN 473
B
 GLY 118ASN 473
C
 GLY 118ASN 473
D
 GLY 118ASN 473
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 9VUC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
82 91Right-handed alpha
Helix 2
AA2
E
101 111Right-handed alpha
Helix 3
AA3
E
117 129Right-handed alpha
Helix 4
AA4
E
137 145Right-handed alpha
Helix 5
AA5
F
82 91Right-handed alpha
Helix 6
AA6
F
101 111Right-handed alpha
Helix 7
AA7
F
117 129Right-handed alpha
Helix 8
AA8
F
137 146Right-handed alpha
Helix 9
AA9
G
82 88Right-handed alpha
Helix 10
AB1
G
101 110Right-handed alpha
Helix 11
AB2
G
117 129Right-handed alpha
Helix 12
AB3
G
137 146Right-handed alpha
Helix 13
AB4
A
119 157Right-handed alpha
Helix 14
AB5
A
164 200Right-handed alpha
Helix 15
AB6
A
204 208Right-handed 310
Helix 16
AB7
A
210 224Right-handed alpha
Helix 17
AB8
A
254 260Right-handed alpha
Helix 18
AB9
A
261 265Right-handed 310
Helix 19
AC1
A
266 276Right-handed alpha
Helix 20
AC2
A
277 282Right-handed alpha
Helix 21
AC3
A
282 292Right-handed alpha
Helix 22
AC4
A
297 309Right-handed alpha
Helix 23
AC5
A
309 334Right-handed alpha
Helix 24
AC6
A
335 337Right-handed 310
Helix 25
AC7
A
344 357Right-handed alpha
Helix 26
AC8
A
368 397Right-handed alpha
Helix 27
AC9
A
400 438Right-handed alpha
Helix 28
AD1
A
444 473Right-handed alpha
Helix 29
AD2
B
119 157Right-handed alpha
Helix 30
AD3
B
164 200Right-handed alpha
Helix 31
AD4
B
204 208Right-handed 310
Helix 32
AD5
B
210 224Right-handed alpha
Helix 33
AD6
B
254 260Right-handed alpha
Helix 34
AD7
B
261 265Right-handed 310
Helix 35
AD8
B
266 276Right-handed alpha
Helix 36
AD9
B
277 282Right-handed alpha
Helix 37
AE1
B
282 293Right-handed alpha
Helix 38
AE2
B
297 309Right-handed alpha
Helix 39
AE3
B
309 334Right-handed alpha
Helix 40
AE4
B
335 337Right-handed 310
Helix 41
AE5
B
344 357Right-handed alpha
Helix 42
AE6
B
368 397Right-handed alpha
Helix 43
AE7
B
400 438Right-handed alpha
Helix 44
AE8
B
444 468Right-handed alpha
Helix 45
AE9
B
470 472Right-handed 310
Helix 46
AF1
C
119 157Right-handed alpha
Helix 47
AF2
C
164 200Right-handed alpha
Helix 48
AF3
C
204 208Right-handed 310
Helix 49
AF4
C
210 224Right-handed alpha
Helix 50
AF5
C
254 260Right-handed alpha
Helix 51
AF6
C
261 265Right-handed 310
Helix 52
AF7
C
266 277Right-handed alpha
Helix 53
AF8
C
282 293Right-handed alpha
Helix 54
AF9
C
297 309Right-handed alpha
Helix 55
AG1
C
309 334Right-handed alpha
Helix 56
AG2
C
344 357Right-handed alpha
Helix 57
AG3
C
368 397Right-handed alpha
Helix 58
AG4
C
400 438Right-handed alpha
Helix 59
AG5
C
444 471Right-handed alpha
Helix 60
AG6
D
119 156Right-handed alpha
Helix 61
AG7
D
164 200Right-handed alpha
Helix 62
AG8
D
204 208Right-handed 310
Helix 63
AG9
D
210 224Right-handed alpha
Helix 64
AH1
D
254 260Right-handed alpha
Helix 65
AH2
D
261 266Right-handed 310
Helix 66
AH3
D
267 277Right-handed alpha
Helix 67
AH4
D
277 282Right-handed alpha
Helix 68
AH5
D
282 293Right-handed alpha
Helix 69
AH6
D
297 309Right-handed alpha
Helix 70
AH7
D
309 334Right-handed alpha
Helix 71
AH8
D
335 337Right-handed 310
Helix 72
AH9
D
344 357Right-handed alpha
Helix 73
AI1
D
368 397Right-handed alpha
Helix 74
AI2
D
400 438Right-handed alpha
Helix 75
AI3
D
444 473Right-handed alpha
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There are 4 sheets in PDB entry 9VUC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 240first strand
Strand 2
A
247 252anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 240first strand
Strand 2
B
247 252anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
234 240first strand
Strand 2
C
247 253anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
234 240first strand
Strand 2
D
247 253anti-parallel
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