Analysis of interatomic Contacts of Structural Units in PDB entry:
9VUH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VUH entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 9VUH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 432GLY 588
A
 PRO 590TYR 594
A
 PRO 596PRO 736
B
 LEU 76LYS 292
C
 PRO 98LYS 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 9VUH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
434 436Right-handed 310
Helix 2
AA2
A
480 492Right-handed alpha
Helix 3
AA3
A
522 530Right-handed alpha
Helix 4
AA4
A
535 556Right-handed alpha
Helix 5
AA5
A
564 566Right-handed 310
Helix 6
AA6
A
600 604Right-handed 310
Helix 7
AA7
A
605 610Right-handed alpha
Helix 8
AA8
A
616 634Right-handed alpha
Helix 9
AA9
A
642 655Right-handed alpha
Helix 10
AB1
A
668 674Right-handed alpha
Helix 11
AB2
A
683 689Right-handed alpha
Helix 12
AB3
A
693 704Right-handed alpha
Helix 13
AB4
A
713 719Right-handed alpha
Helix 14
AB5
A
720 724Right-handed 310
Helix 15
AB6
A
731 735Right-handed 310
Helix 16
AB7
B
77 97Right-handed alpha
Helix 17
AB8
B
100 118Right-handed alpha
Helix 18
AB9
B
124 140Right-handed alpha
Helix 19
AC1
B
145 161Right-handed alpha
Helix 20
AC2
B
171 192Right-handed alpha
Helix 21
AC3
B
201 212Right-handed alpha
Helix 22
AC4
B
217 232Right-handed alpha
Helix 23
AC5
B
235 240Right-handed alpha
Helix 24
AC6
B
241 258Right-handed alpha
Helix 25
AC7
B
267 272Right-handed 310
Helix 26
AC8
B
274 291Right-handed alpha
Helix 27
AC9
C
99 112Right-handed alpha
Helix 28
AD1
C
113 117Right-handed 310
Helix 29
AD2
C
128 146Right-handed alpha
Helix 30
AD3
C
148 155Right-handed alpha
Helix 31
AD4
C
156 161Right-handed alpha
Helix 32
AD5
C
163 173Right-handed alpha
Helix 33
AD6
C
196 216Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9VUH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 446first strand
Strand 2
A
450 457anti-parallel
Strand 3
A
463 469anti-parallel
Strand 4
A
512 517anti-parallel
Strand 5
A
500 505anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
558 559first strand
Strand 2
A
585 586anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
568 570first strand
Strand 2
A
576 578anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il