Analysis of interatomic Contacts of Structural Units in PDB entry:
9VUI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VUI entry

There are 7 chains in PDB entry 9VUI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 342	MET 506
B	LEU 342	ILE 372
C	LEU 342	ARG 400
D	LEU 342	ASN 382
L	GLN 8	ASP 2183
X	GLN 59	MET 174
Y	ARG 51	LEU 173

There are123 helices in PDB entry 9VUI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	342	370	Right-handed alpha
Helix 2	AA2	A	400	404	Right-handed alpha
Helix 3	AA3	A	405	410	Right-handed alpha
Helix 4	AA4	A	457	471	Right-handed alpha
Helix 5	AA5	A	474	488	Right-handed alpha
Helix 6	AA6	A	490	506	Right-handed alpha
Helix 7	AA7	B	343	371	Right-handed alpha
Helix 8	AA8	C	343	374	Right-handed alpha
Helix 9	AA9	C	383	387	Right-handed 310
Helix 10	AB1	C	391	393	Right-handed 310
Helix 11	AB2	C	394	400	Right-handed alpha
Helix 12	AB3	D	343	368	Right-handed alpha
Helix 13	AB4	L	22	32	Right-handed alpha
Helix 14	AB5	L	43	56	Right-handed alpha
Helix 15	AB6	L	59	77	Right-handed alpha
Helix 16	AB7	L	90	95	Right-handed alpha
Helix 17	AB8	L	103	135	Right-handed alpha
Helix 18	AB9	L	144	151	Right-handed alpha
Helix 19	AC1	L	151	158	Right-handed alpha
Helix 20	AC2	L	161	182	Right-handed alpha
Helix 21	AC3	L	224	248	Right-handed alpha
Helix 22	AC4	L	251	273	Right-handed alpha
Helix 23	AC5	L	275	282	Right-handed alpha
Helix 24	AC6	L	282	292	Right-handed alpha
Helix 25	AC7	L	293	295	Right-handed 310
Helix 26	AC8	L	302	319	Right-handed alpha
Helix 27	AC9	L	323	339	Right-handed alpha
Helix 28	AD1	L	342	350	Right-handed alpha
Helix 29	AD2	L	351	355	Right-handed 310
Helix 30	AD3	L	362	375	Right-handed alpha
Helix 31	AD4	L	382	404	Right-handed alpha
Helix 32	AD5	L	418	428	Right-handed alpha
Helix 33	AD6	L	432	439	Right-handed alpha
Helix 34	AD7	L	440	444	Right-handed 310
Helix 35	AD8	L	460	465	Right-handed alpha
Helix 36	AD9	L	472	476	Right-handed 310
Helix 37	AE1	L	481	485	Right-handed 310
Helix 38	AE2	L	497	504	Right-handed alpha
Helix 39	AE3	L	509	519	Right-handed alpha
Helix 40	AE4	L	520	524	Right-handed 310
Helix 41	AE5	L	550	567	Right-handed alpha
Helix 42	AE6	L	568	571	Right-handed 310
Helix 43	AE7	L	666	671	Right-handed alpha
Helix 44	AE8	L	672	688	Right-handed alpha
Helix 45	AE9	L	694	701	Right-handed alpha
Helix 46	AF1	L	721	725	Right-handed 310
Helix 47	AF2	L	743	763	Right-handed alpha
Helix 48	AF3	L	788	814	Right-handed alpha
Helix 49	AF4	L	819	823	Right-handed 310
Helix 50	AF5	L	846	851	Right-handed alpha
Helix 51	AF6	L	863	881	Right-handed alpha
Helix 52	AF7	L	884	906	Right-handed alpha
Helix 53	AF8	L	913	923	Right-handed alpha
Helix 54	AF9	L	923	933	Right-handed alpha
Helix 55	AG1	L	934	938	Right-handed 310
Helix 56	AG2	L	945	949	Right-handed 310
Helix 57	AG3	L	955	969	Right-handed alpha
Helix 58	AG4	L	975	983	Right-handed alpha
Helix 59	AG5	L	990	996	Right-handed alpha
Helix 60	AG6	L	1008	1024	Right-handed alpha
Helix 61	AG7	L	1027	1031	Right-handed 310
Helix 62	AG8	L	1037	1051	Right-handed alpha
Helix 63	AG9	L	1056	1067	Right-handed alpha
Helix 64	AH1	L	1067	1079	Right-handed alpha
Helix 65	AH2	L	1082	1092	Right-handed alpha
Helix 66	AH3	L	1096	1105	Right-handed alpha
Helix 67	AH4	L	1105	1119	Right-handed alpha
Helix 68	AH5	L	1132	1145	Right-handed alpha
Helix 69	AH6	L	1145	1150	Right-handed alpha
Helix 70	AH7	L	1162	1164	Right-handed 310
Helix 71	AH8	L	1177	1183	Right-handed alpha
Helix 72	AH9	L	1232	1250	Right-handed alpha
Helix 73	AI1	L	1252	1264	Right-handed alpha
Helix 74	AI2	L	1270	1278	Right-handed alpha
Helix 75	AI3	L	1307	1311	Right-handed 310
Helix 76	AI4	L	1318	1323	Right-handed alpha
Helix 77	AI5	L	1329	1348	Right-handed alpha
Helix 78	AI6	L	1428	1455	Right-handed alpha
Helix 79	AI7	L	1471	1478	Right-handed alpha
Helix 80	AI8	L	1479	1495	Right-handed alpha
Helix 81	AI9	L	1495	1503	Right-handed alpha
Helix 82	AJ1	L	1506	1521	Right-handed alpha
Helix 83	AJ2	L	1526	1535	Right-handed alpha
Helix 84	AJ3	L	1535	1545	Right-handed alpha
Helix 85	AJ4	L	1561	1582	Right-handed alpha
Helix 86	AJ5	L	1599	1620	Right-handed alpha
Helix 87	AJ6	L	1632	1651	Right-handed alpha
Helix 88	AJ7	L	1653	1657	Right-handed 310
Helix 89	AJ8	L	1670	1686	Right-handed alpha
Helix 90	AJ9	L	1715	1719	Right-handed 310
Helix 91	AK1	L	1725	1735	Right-handed alpha
Helix 92	AK2	L	1749	1754	Right-handed 310
Helix 93	AK3	L	1763	1775	Right-handed alpha
Helix 94	AK4	L	1792	1803	Right-handed alpha
Helix 95	AK5	L	1828	1839	Right-handed alpha
Helix 96	AK6	L	1851	1856	Right-handed 310
Helix 97	AK7	L	1859	1870	Right-handed alpha
Helix 98	AK8	L	1889	1907	Right-handed alpha
Helix 99	AK9	L	1925	1934	Right-handed alpha
Helix 100	AL1	L	1969	1981	Right-handed alpha
Helix 101	AL2	L	1985	2000	Right-handed alpha
Helix 102	AL3	L	2000	2005	Right-handed alpha
Helix 103	AL4	L	2016	2020	Right-handed 310
Helix 104	AL5	L	2022	2031	Right-handed alpha
Helix 105	AL6	L	2036	2045	Right-handed alpha
Helix 106	AL7	L	2051	2069	Right-handed alpha
Helix 107	AL8	L	2084	2111	Right-handed alpha
Helix 108	AL9	L	2113	2127	Right-handed alpha
Helix 109	AM1	L	2137	2142	Right-handed 310
Helix 110	AM2	L	2143	2153	Right-handed alpha
Helix 111	AM3	L	2164	2182	Right-handed alpha
Helix 112	AM4	X	60	85	Right-handed alpha
Helix 113	AM5	X	101	115	Right-handed alpha
Helix 114	AM6	X	120	131	Right-handed alpha
Helix 115	AM7	X	134	152	Right-handed alpha
Helix 116	AM8	X	155	160	Right-handed 310
Helix 117	AM9	X	162	167	Right-handed alpha
Helix 118	AN1	Y	53	87	Right-handed alpha
Helix 119	AN2	Y	101	115	Right-handed alpha
Helix 120	AN3	Y	120	131	Right-handed alpha
Helix 121	AN4	Y	134	152	Right-handed alpha
Helix 122	AN5	Y	156	160	Right-handed 310
Helix 123	AN6	Y	162	168	Right-handed alpha

There are 11 sheets in PDB entry 9VUI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	372	first strand
Strand 2	A	395	399	anti-parallel
Strand 3	D	371	374	parallel
Strand 4	L	378	381	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	20	21	first strand
Strand 2	L	360	361	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	83	84	first strand
Strand 2	L	219	223	parallel
Strand 3	L	210	214	anti-parallel
Strand 4	L	201	205	anti-parallel
Strand 5	L	196	197	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	545	549	first strand
Strand 2	L	530	534	anti-parallel
Strand 3	L	704	707	parallel
Strand 4	L	731	733	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	765	771	first strand
Strand 2	L	774	784	anti-parallel
Strand 3	L	653	663	anti-parallel
Strand 4	L	824	826	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	831	832	first strand
Strand 2	L	835	838	anti-parallel
Strand 3	L	841	842	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1166	1171	first strand
Strand 2	L	1359	1365	anti-parallel
Strand 3	L	1187	1192	anti-parallel
Strand 4	L	1312	1314	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1590	1593	first strand
Strand 2	L	1664	1667	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1722	1724	first strand
Strand 2	L	1937	1943	anti-parallel
Strand 3	L	1955	1962	anti-parallel
Strand 4	L	1908	1918	anti-parallel
Strand 5	L	1875	1880	parallel
Strand 6	L	1783	1787	parallel
Strand 7	L	1806	1810	parallel
Strand 8	L	1845	1846	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	2009	2010	first strand
Strand 2	L	2013	2014	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	2128	2132	first strand
Strand 2	L	2158	2162	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VUI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VUI