Analysis of interatomic Contacts of Structural Units in PDB entry:
9VUJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VUJ entry

There are 5 chains in PDB entry 9VUJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 341	MET 506
B	LEU 341	ILE 374
C	LEU 341	ARG 400
D	LEU 341	ASN 382
L	ASN 7	ILE 1405

There are 76 helices in PDB entry 9VUJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	341	370	Right-handed alpha
Helix 2	AA2	A	400	404	Right-handed alpha
Helix 3	AA3	A	404	410	Right-handed alpha
Helix 4	AA4	A	457	471	Right-handed alpha
Helix 5	AA5	A	474	488	Right-handed alpha
Helix 6	AA6	A	490	506	Right-handed alpha
Helix 7	AA7	B	342	371	Right-handed alpha
Helix 8	AA8	C	342	374	Right-handed alpha
Helix 9	AA9	C	391	393	Right-handed 310
Helix 10	AB1	C	394	400	Right-handed alpha
Helix 11	AB2	D	342	369	Right-handed alpha
Helix 12	AB3	L	22	32	Right-handed alpha
Helix 13	AB4	L	43	56	Right-handed alpha
Helix 14	AB5	L	59	76	Right-handed alpha
Helix 15	AB6	L	77	79	Right-handed 310
Helix 16	AB7	L	87	89	Right-handed 310
Helix 17	AB8	L	90	95	Right-handed alpha
Helix 18	AB9	L	103	119	Right-handed alpha
Helix 19	AC1	L	120	135	Right-handed alpha
Helix 20	AC2	L	144	151	Right-handed alpha
Helix 21	AC3	L	151	158	Right-handed alpha
Helix 22	AC4	L	161	182	Right-handed alpha
Helix 23	AC5	L	224	248	Right-handed alpha
Helix 24	AC6	L	251	273	Right-handed alpha
Helix 25	AC7	L	275	282	Right-handed alpha
Helix 26	AC8	L	282	293	Right-handed alpha
Helix 27	AC9	L	297	301	Right-handed 310
Helix 28	AD1	L	302	320	Right-handed alpha
Helix 29	AD2	L	323	339	Right-handed alpha
Helix 30	AD3	L	342	346	Right-handed 310
Helix 31	AD4	L	347	355	Right-handed 310
Helix 32	AD5	L	362	375	Right-handed alpha
Helix 33	AD6	L	382	404	Right-handed alpha
Helix 34	AD7	L	418	428	Right-handed alpha
Helix 35	AD8	L	432	439	Right-handed alpha
Helix 36	AD9	L	440	444	Right-handed 310
Helix 37	AE1	L	459	464	Right-handed 310
Helix 38	AE2	L	472	480	Right-handed 310
Helix 39	AE3	L	497	504	Right-handed alpha
Helix 40	AE4	L	509	519	Right-handed alpha
Helix 41	AE5	L	550	567	Right-handed alpha
Helix 42	AE6	L	568	574	Right-handed 310
Helix 43	AE7	L	666	671	Right-handed 310
Helix 44	AE8	L	672	688	Right-handed alpha
Helix 45	AE9	L	694	701	Right-handed alpha
Helix 46	AF1	L	721	725	Right-handed 310
Helix 47	AF2	L	743	763	Right-handed alpha
Helix 48	AF3	L	788	814	Right-handed alpha
Helix 49	AF4	L	819	823	Right-handed 310
Helix 50	AF5	L	849	853	Right-handed 310
Helix 51	AF6	L	863	881	Right-handed alpha
Helix 52	AF7	L	886	906	Right-handed alpha
Helix 53	AF8	L	913	922	Right-handed alpha
Helix 54	AF9	L	923	933	Right-handed alpha
Helix 55	AG1	L	934	938	Right-handed 310
Helix 56	AG2	L	944	949	Right-handed 310
Helix 57	AG3	L	955	970	Right-handed alpha
Helix 58	AG4	L	975	982	Right-handed alpha
Helix 59	AG5	L	990	997	Right-handed alpha
Helix 60	AG6	L	1008	1024	Right-handed alpha
Helix 61	AG7	L	1027	1031	Right-handed 310
Helix 62	AG8	L	1037	1051	Right-handed alpha
Helix 63	AG9	L	1056	1066	Right-handed alpha
Helix 64	AH1	L	1067	1079	Right-handed alpha
Helix 65	AH2	L	1082	1092	Right-handed alpha
Helix 66	AH3	L	1096	1105	Right-handed alpha
Helix 67	AH4	L	1105	1120	Right-handed alpha
Helix 68	AH5	L	1132	1145	Right-handed alpha
Helix 69	AH6	L	1145	1150	Right-handed alpha
Helix 70	AH7	L	1161	1165	Right-handed alpha
Helix 71	AH8	L	1177	1183	Right-handed alpha
Helix 72	AH9	L	1232	1249	Right-handed alpha
Helix 73	AI1	L	1252	1264	Right-handed alpha
Helix 74	AI2	L	1270	1278	Right-handed alpha
Helix 75	AI3	L	1304	1309	Right-handed alpha
Helix 76	AI4	L	1330	1348	Right-handed alpha

There are 8 sheets in PDB entry 9VUJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	372	first strand
Strand 2	A	395	399	anti-parallel
Strand 3	D	371	374	parallel
Strand 4	L	378	381	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	20	21	first strand
Strand 2	L	360	361	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	83	84	first strand
Strand 2	L	219	223	parallel
Strand 3	L	210	214	anti-parallel
Strand 4	L	201	205	anti-parallel
Strand 5	L	196	197	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	411	412	first strand
Strand 2	L	447	448	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	545	549	first strand
Strand 2	L	530	534	anti-parallel
Strand 3	L	704	707	parallel
Strand 4	L	731	733	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	765	770	first strand
Strand 2	L	774	784	anti-parallel
Strand 3	L	653	663	anti-parallel
Strand 4	L	824	826	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	830	831	first strand
Strand 2	L	836	837	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1166	1171	first strand
Strand 2	L	1359	1365	anti-parallel
Strand 3	L	1187	1192	anti-parallel
Strand 4	L	1312	1314	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VUJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VUJ